Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30415
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   118   3e-27
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   116   8e-27
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           116   1e-26
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    45   3e-05
At4g20860.1 68417.m03026 FAD-binding domain-containing protein s...    29   2.6  
At4g11090.1 68417.m01801 expressed protein other hypothetical pr...    27   6.0  
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi...    27   7.9  

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  118 bits (283), Expect = 3e-27
 Identities = 50/84 (59%), Positives = 71/84 (84%)
 Frame = +2

Query: 2   AVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDI 181
           +VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD+
Sbjct: 9   SVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDM 68

Query: 182 RVTVKGGGHVAQVYAIRQAISKAL 253
           R+   GGG+ ++VYAIRQ+I+KAL
Sbjct: 69  RIRATGGGNTSRVYAIRQSIAKAL 92



 Score =  103 bits (248), Expect = 6e-23
 Identities = 46/53 (86%), Positives = 51/53 (96%)
 Frame = +1

Query: 256 AFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 414
           A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRCE KKFGGPGARAR+QKSYR
Sbjct: 94  AYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  116 bits (280), Expect = 8e-27
 Identities = 50/84 (59%), Positives = 71/84 (84%)
 Frame = +2

Query: 2   AVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDI 181
           +VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK +F+ V++
Sbjct: 9   SVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNM 68

Query: 182 RVTVKGGGHVAQVYAIRQAISKAL 253
           R+ V GGGH +QVYAIRQ+I+KAL
Sbjct: 69  RIRVNGGGHTSQVYAIRQSIAKAL 92



 Score =  105 bits (251), Expect = 2e-23
 Identities = 47/53 (88%), Positives = 51/53 (96%)
 Frame = +1

Query: 256 AFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 414
           A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 94  AYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  116 bits (279), Expect = 1e-26
 Identities = 49/84 (58%), Positives = 71/84 (84%)
 Frame = +2

Query: 2   AVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDI 181
           +VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK +F+ V++
Sbjct: 9   SVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNM 68

Query: 182 RVTVKGGGHVAQVYAIRQAISKAL 253
           R+ V GGGH +QVYAIRQ+I+KAL
Sbjct: 69  RIRVNGGGHTSQVYAIRQSIAKAL 92



 Score =  105 bits (251), Expect = 2e-23
 Identities = 47/53 (88%), Positives = 51/53 (96%)
 Frame = +1

Query: 256 AFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 414
           A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 94  AYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 28/79 (35%), Positives = 42/79 (53%)
 Frame = +2

Query: 17  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 196
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +     DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 197 GGGHVAQVYAIRQAISKAL 253
           GGG   QV AI+  IS+AL
Sbjct: 369 GGGTTGQVGAIQLGISRAL 387


>At4g20860.1 68417.m03026 FAD-binding domain-containing protein
           simlar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 530

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 220 LRYQTSYFEGSDAFYQKYVDEASKKEIKDILVQYDRSLLVADP 348
           LR++  YF+    + QK V E   +E+    ++ D  L++ +P
Sbjct: 364 LRFEDQYFKAKSDYVQKPVPENVFEEVTKRFLEQDTPLMIFEP 406


>At4g11090.1 68417.m01801 expressed protein other hypothetical
           proteins - Arabidopsis thaliana
          Length = 432

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 87  VHWTWLSPDCCSTNFRNLSFCSARKNSLWS 176
           ++W W   DC    F +L F    +N  W+
Sbjct: 121 LNWKWKPNDCSLPRFDSLRFLQLMRNKSWA 150


>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 588

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 137 PILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAIS 244
           P+L L + K S V+ RV V+  GH+A      +A++
Sbjct: 139 PLLELMRRKMSWVEQRVVVRALGHLASYETTFEAVA 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,349,474
Number of Sequences: 28952
Number of extensions: 220486
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)