Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30414
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces... 87 2e-18
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 28 1.6
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 27 2.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.7
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 27 3.6
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 27 3.6
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 26 4.8
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 4.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.3
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 8.3
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 8.3
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 25 8.3
>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 51
Score = 87.4 bits (207), Expect = 2e-18
Identities = 35/51 (68%), Positives = 43/51 (84%)
Frame = -3
Query: 223 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 71
M +HK+F K+KLAK +QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 1 MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 59 FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 151
++S+ L +P TP S +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +1
Query: 244 NRSEATAPSTSASGLPKMSTQEMAAAF-QNYLPVLNDSMLSQQTAAALSLSYLSNMSALA 420
NR +A + + + + +E + F +++LP L D + S +T +L+Y S+ + +
Sbjct: 72 NRDKAAVVTAPIASTHESNYEESVSKFKESWLPQLKDLIESHKTICESTLAYESDQAMAS 131
Query: 421 GYSLQ--NSLHNSLQNSFQAE 477
+L+ L + +N Q E
Sbjct: 132 SNTLKRIKDLKSKPKNIIQLE 152
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 89 SPVTPLSVISNSVSCAHPYPLRNGS 163
+P TP++V S++V+ AH Y GS
Sbjct: 982 NPYTPIAVASSTVNPAHTYKPHGGS 1006
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 379 ALSLSYLSNMSALAGYSLQNSLHNSLQNSFQAEFYRQ 489
+ SL + S+ SL NSL+ S++ SF + YR+
Sbjct: 61 SFSLKSMPKQSSHMSASLLNSLNTSMKKSFSRKKYRE 97
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 447 QFPSEFLSSGILQTVSREQFLSYLPPVKKQKRGPKQSTVRFT 572
+ P+ F ILQTV E +P + KR ++ T RFT
Sbjct: 100 EHPNNFFDVIILQTVFSEISSKSIPLYNRMKRLCQEKTKRFT 141
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 328 NYLPVLNDSMLSQQTAAALSLSYLSNMSALAGYSLQNSLHNSLQNSFQAEFYRQFLEN-- 501
N+LP++ND L +A LS L + QN+ + +++F+ + Y++ EN
Sbjct: 26 NFLPIINDLQLLHPASAPPLLSEFQKQCTLE-FVRQNADLSITKDNFR-DVYKKLTENED 83
Query: 502 -SFC-RIYRQ*RNRNGDRNSLRSD 567
SF + + + +NS++ D
Sbjct: 84 DSFANQAEKPSMEQQNSKNSIKED 107
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 4.8
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 510 SYLPPVKKQKRGPKQSTVRFTN-PSVSKPVTSKSLGGT-MPTVTK-ATPMSVS 659
S++PP +G S T+ P +KP+ S SLGGT PT TK A P + S
Sbjct: 105 SFVPPKPAIPKGKVLSLGGNTSAPKSTKPI-SISLGGTKAPTTTKPAAPAAQS 156
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 585 SKPVTSKSLGGTMPTVTKATPMSVSTSL 668
S P+TS ++ T +T +T ++ STS+
Sbjct: 2349 STPITSSTVVNTSTPITSSTALNTSTSI 2376
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 579 SVSKPVTSKSLGGTMPTVTKATPMSVSTSL 668
+ S P+TS S+ + +T +T ++ STS+
Sbjct: 511 NTSTPITSSSVLNSSTPITSSTALNTSTSI 540
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 579 SVSKPVTSKSLGGTMPTVTKATPMSVSTSL 668
+ S P+TS S+ + +T +T ++ STS+
Sbjct: 2623 NTSTPITSSSVLNSSTPITSSTALNTSTSI 2652
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 579 SVSKPVTSKSLGGTMPTVTKATPMSVSTSL 668
+ S P+TS S+ + +T +T ++ STS+
Sbjct: 2851 NTSTPITSSSVLNSSTPITSSTALNTSTSI 2880
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 579 SVSKPVTSKSLGGTMPTVTKATPMSVSTSL 668
+ S P+TS S+ + +T +T ++ STS+
Sbjct: 2947 NTSTPITSSSVLNSSTPITSSTALNTSTSI 2976
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 319 AFQNYLPVLNDSMLSQQTAAALSLSYLSNMS 411
+F +YL LND +LS+ T + S L +S
Sbjct: 368 SFDSYLDSLNDCLLSESTHTGVLCSSLKLLS 398
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 510 SYLPPVKKQKRGPKQSTVRFTNPSVSKPVTSKSLGGTMPTVTKATPMSVSTSL 668
S+ PP +++RG +T T S + P TS + T + +S+ TS+
Sbjct: 159 SHSPPSTRKRRGSVGTTATHTKRSKNAPKTSPK-DASNETADQEKELSLHTSI 210
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 513 YLPPVKKQKRGPKQSTVRFTNPSVSKPVTS 602
+LPP+K+ K+ +Q +V PS + T+
Sbjct: 57 HLPPIKRNKQKKQQDSVSDDTPSEATTTTN 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,061
Number of Sequences: 5004
Number of extensions: 56959
Number of successful extensions: 211
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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