Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30414
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944 95 7e-20
02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254 95 7e-20
02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907 95 7e-20
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 30 1.6
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 30 2.2
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124... 29 5.0
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 29 5.0
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601... 28 8.7
01_03_0206 - 13783169-13783651,13783761-13783903,13783962-137841... 28 8.7
>06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944
Length = 51
Score = 94.7 bits (225), Expect = 7e-20
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = -3
Query: 223 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 77
M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254
Length = 51
Score = 94.7 bits (225), Expect = 7e-20
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = -3
Query: 223 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 77
M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907
Length = 51
Score = 94.7 bits (225), Expect = 7e-20
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = -3
Query: 223 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 77
M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 301 TQEMAAAFQNYLPVLNDSMLSQQTAAALSL---SYLSNMSALAGYSLQNSLHNSLQNSFQ 471
T MAA +YLP L D M + A SL + M+A GY + H L+ +
Sbjct: 235 TAAMAADTPSYLPPLVDGMAAMGAAMDCSLEDGQTAAAMAATNGYYQHHQKHQQLEIELE 294
Query: 472 AEFYRQ 489
E RQ
Sbjct: 295 EEEQRQ 300
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Frame = +2
Query: 116 SNSVSCAHPYPLRNGSV-----LFQLFGQFALNNKRLMGRHFEQSRPKIDQKQRHRPRPH 280
+ V H + +RNGS + + + + N+K + + + K + P
Sbjct: 268 NRGVPVIHDWAIRNGSCPEGKKVPKDYACVSSNSKCVQASNSQGYLCKCSEGYEGNPYLP 327
Query: 281 QGCQ---RCPLRKWQPPSKIIYPC*TTQC 358
+GCQ C LRK P K +YPC C
Sbjct: 328 KGCQDIDECKLRKEDPKYKELYPCRHGMC 356
>09_02_0565 +
10710770-10711003,10711368-10711527,10712277-10712477,
10712564-10712628,10712740-10712767,10712847-10712923,
10713023-10713109,10713572-10713622,10713857-10713937,
10714125-10714346,10714424-10714517,10714608-10714748,
10716383-10716444,10716519-10717106
Length = 696
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 211 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKR 101
K IIKR+ AK+L+Q P++ + TG +AKR
Sbjct: 214 KETIIKREAAKRLEQTSEEPEYAPLPTGPGAVADAKR 250
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 519 PPVKKQKRGPKQSTVRFTNPSVSKPVTSKSLGG 617
PP KQ RGP+ + NP +KP+T+ GG
Sbjct: 44 PPAPKQHRGPRPAP---RNPGSAKPLTAGVPGG 73
>02_05_0968 +
33156585-33156941,33158510-33159902,33160035-33160118,
33160216-33160265
Length = 627
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 504 FLSYLPPVKKQKRGPKQSTVRFTNPSVSKPVTSKSLGGTMPTVTKATPMSVSTSLA 671
F S+L KK +RG + + T+PSV S G P+ P S+ A
Sbjct: 513 FKSFLSFGKKNRRGKDVTVIDCTSPSVPSVADDDSGSGGWPSGETIKPRMASSDAA 568
>01_03_0206 -
13783169-13783651,13783761-13783903,13783962-13784128,
13784641-13785149,13786031-13786312,13786397-13786792,
13787232-13787504
Length = 750
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 432 TEFVTQFPSEFLSSGILQTVSREQFLSYLPPVKK 533
T +F S F+S G+ +R +++ +L +KK
Sbjct: 165 TGLAARFASPFISEGVYHVAARRRYMRFLELIKK 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,109,215
Number of Sequences: 37544
Number of extensions: 397965
Number of successful extensions: 1283
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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