Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30414
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.73 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.8  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   9.0  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 227 EQSRPKIDQKQRHRPRPHQGCQRCPLRKWQ 316
           +QS+P +  +Q+ + + HQG    PL + Q
Sbjct: 215 QQSQPGMHPRQQQQAQQHQGVVTSPLSQQQ 244


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 508 RNCSLETVCRIPLERNSEGNCVTNSVGCNR 419
           RN  +E    I   R     CVTNSV C+R
Sbjct: 244 RNVLIERAKSIRARRTE---CVTNSVTCDR 270


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 576 PSVSKPVTSKSLGGTMPTVTKATPMSVSTSLAK 674
           P   K V S   GG++PT    TP +V   L +
Sbjct: 141 PFHEKLVESFPRGGSLPTPVTPTPTTVQQLLRR 173


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 302 VDIFGSPDADVDGAV-ASDRFSALIVQNVGP 213
           +D+FGSPDA     +  ++ F  ++   VGP
Sbjct: 57  LDLFGSPDAMFSQVLKKAENFKDVVKIWVGP 87


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 572 QPFSVETCH*QVVRRHH 622
           +PF    CH +  R HH
Sbjct: 8   KPFECPECHKRFTRDHH 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,922
Number of Sequences: 438
Number of extensions: 4151
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)