Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30414
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C) 92 3e-19
At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) simi... 90 2e-18
At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A) 82 3e-16
At1g60095.1 68414.m06771 jacalin lectin family protein contains ... 32 0.34
At2g40070.1 68415.m04923 expressed protein 30 1.4
At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family prote... 30 1.4
At4g23700.1 68417.m03411 cation/hydrogen exchanger, putative (CH... 29 2.4
At2g24200.1 68415.m02891 cytosol aminopeptidase identical to cyt... 29 2.4
At1g29310.1 68414.m03583 protein transport protein sec61, putati... 29 3.1
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 29 4.1
At1g50890.1 68414.m05722 expressed protein 28 5.5
At1g35770.1 68414.m04447 Ulp1 protease family protein contains P... 28 5.5
At2g34250.1 68415.m04190 protein transport protein sec61, putati... 28 7.2
At1g56415.1 68414.m06488 Expressed protein 28 7.2
At4g14746.1 68417.m02269 expressed protein 27 9.6
At1g70100.3 68414.m08067 expressed protein 27 9.6
At1g70100.2 68414.m08066 expressed protein 27 9.6
At1g70100.1 68414.m08065 expressed protein 27 9.6
>At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)
Length = 51
Score = 92.3 bits (219), Expect = 3e-19
Identities = 37/49 (75%), Positives = 45/49 (91%)
Frame = -3
Query: 223 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 77
M +HK+F+IK+KL KK++QNRPIP W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 49
>At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) similar
to ribosomal protein L39 GB:P51424 [Arabidopsis
thaliana]
Length = 51
Score = 89.8 bits (213), Expect = 2e-18
Identities = 36/49 (73%), Positives = 44/49 (89%)
Frame = -3
Query: 223 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 77
M +HK+F+IK+KL KK++QNRPIP W+R+RT N IRYNAKRRHWRRTKL
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKL 49
>At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A)
Length = 44
Score = 82.2 bits (194), Expect = 3e-16
Identities = 33/42 (78%), Positives = 39/42 (92%)
Frame = -3
Query: 202 IIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 77
+IK+KL KK++QNRPIP W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 1 MIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 42
>At1g60095.1 68414.m06771 jacalin lectin family protein contains
similarity to myrosinase-binding protein homolog
[Arabidopsis thaliana] GI:2997767;
Length = 531
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +3
Query: 417 SRLQPTEFVTQFPSEFLSSGILQTVSREQFLSYLPPVKKQKRGPKQSTVRFTNPSVSK 590
S +Q EFV +P+EF++S + T+ E F+ K +G ST F +PS SK
Sbjct: 294 SWVQQGEFVVDYPNEFITS-VEGTMRTESFMQVASLTFKTSKGRTSST--FGSPSDSK 348
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 546 PKQSTVRFTNPSVSKPVTSKSLGGTMPTVTKATPMSVSTSLA 671
P T R T S ++P + S T+ TK TPMS STSL+
Sbjct: 205 PSTPTSRATVSSATRPSLTNSRS-TVSATTKPTPMSRSTSLS 245
>At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family protein
low similarity to SP|P22643 Haloalkane dehalogenase (EC
3.8.1.5) {Xanthobacter autotrophicus}; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 380
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +2
Query: 86 PSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSRPKIDQKQR 262
PS V L+++++ ++ + P P + LFG+F N L R E P + + ++
Sbjct: 220 PSKVEKLAILNSPLTVSSPVPGLFKQLRIPLFGEFTCQNAILAERFIEGGSPYVLKNEK 278
>At4g23700.1 68417.m03411 cation/hydrogen exchanger, putative
(CHX17) similar to Na+/H+-exchanging protein slr1595 -
Synechocystis sp., EMBL:D90902; monovalent cation:proton
antiporter family 2 (CPA2) member, PMID:11500563
Length = 820
Score = 29.5 bits (63), Expect = 2.4
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Frame = +3
Query: 162 LFCFSFLANLRLIINVLWADI-LNNQGRKSIRSNGTVHV--RIRAAKDVHSGNGSRLPKL 332
+FCF + N+ I+N++ A +N + S+ + + + R A H + LP
Sbjct: 456 MFCFQSIMNIPTIVNLIEASRGINRKENLSVYAMHLMELSERSSAILMAHKVRRNGLPFW 515
Query: 333 STRVERLNAVATDCGGTIFIIFE*HERSSRLQPTEFVTQFPSEFLSSGILQTVSREQFLS 512
+ N+ ++D + + FE R SR+ P + I Q+ R++
Sbjct: 516 NKDKSENNSSSSD---MVVVAFEAFRRLSRVSVRPMTAISPMATIHEDICQSAERKKTAM 572
Query: 513 YLPPVKKQKR 542
+ P K R
Sbjct: 573 VILPFHKHVR 582
>At2g24200.1 68415.m02891 cytosol aminopeptidase identical to
cytosol aminopeptidase SP:P30184 from [Arabidopsis
thaliana]; contains Pfam profiles: PF00883 cytosol
aminopeptidase family catalytic domain, PF02789: cytosol
aminopeptidase family N-terminal domain
Length = 520
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 471 SGILQTVSREQFLSYLPPVKKQKRGPKQSTVRFT----NPSVSKPVTSKSLGGTMPTVTK 638
SG+L VS E+ + P R P + R SVS PV SLG + TV+K
Sbjct: 65 SGLLAQVSSEEDFTGKPGQSTVLRLPGLGSKRIALIGLGQSVSSPVAFHSLGEAVATVSK 124
Query: 639 ATPMSVSTSLA 671
A S STS A
Sbjct: 125 A---SQSTSAA 132
>At1g29310.1 68414.m03583 protein transport protein sec61, putative
similar to PfSec61 [Plasmodium falciparum] GI:3057044;
contains Pfam profile PF00344: eubacterial secY protein
Length = 475
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +1
Query: 322 FQNYLPVLNDSMLSQQTAAALSLSYLSNMSALAGYSLQNSLHNSLQNSFQAEFYRQFLEN 501
F+ LPV + S QQ + + L Y SNM + LQ++L ++L Q YR+F N
Sbjct: 264 FRVVLPVRSKSARGQQGSYPIKLFYTSNMPII----LQSALVSNLYFISQL-LYRKFSGN 318
Query: 502 SFCRIYRQ 525
F + Q
Sbjct: 319 FFVNLLGQ 326
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/83 (26%), Positives = 32/83 (38%)
Frame = +3
Query: 405 HERSSRLQPTEFVTQFPSEFLSSGILQTVSREQFLSYLPPVKKQKRGPKQSTVRFTNPSV 584
HE L F ++ ILQ + + P +KK + + T N S
Sbjct: 806 HELPEDLDCLIFKNMLKTQVEKQKILQASGGKSGILNKPEIKKINQDLAKKTNAAANESQ 865
Query: 585 SKPVTSKSLGGTMPTVTKATPMS 653
PVTSK ++ T T + P S
Sbjct: 866 RTPVTSKPPSVSVGTATTSKPNS 888
>At1g50890.1 68414.m05722 expressed protein
Length = 821
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +1
Query: 217 PTF*TIKAENRSEATAPSTSASGLPKMSTQEMAAAFQNYLPVLNDSMLSQQ--TAAAL-- 384
P F + +N+S + + + +T+ AAFQ P ++ + S T A+L
Sbjct: 172 PLFEAMAEQNKSLQSGAAICMGKMIDSATEPPVAAFQKLCPRISKLLNSPNYITKASLLP 231
Query: 385 SLSYLSNMSALAGYSLQNSLHN 450
+ LS + A+A SL++ LH+
Sbjct: 232 VVGSLSQVGAIAPQSLESLLHS 253
>At1g35770.1 68414.m04447 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 968
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +3
Query: 528 KKQKRGPKQSTVRFTNPSVSKPVTSKSLGGTMPTVTKATPMSVSTSLA 671
KKQKRG K + R N +K TSK+ GG + TP V +S A
Sbjct: 325 KKQKRGAKSNATR--NRKGAK--TSKNHGGVRSKPRRHTPEEVGSSEA 368
>At2g34250.1 68415.m04190 protein transport protein sec61, putative
similar to PfSec61 [Plasmodium falciparum] GI:3057044;
contains Pfam profile PF00344: eubacterial secY protein
Length = 475
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +1
Query: 322 FQNYLPVLNDSMLSQQTAAALSLSYLSNMSALAGYSLQNSLHNSLQNSFQAEFYRQFLEN 501
F+ LPV + + QQ + + L Y SNM + LQ++L ++L Q YR+F N
Sbjct: 264 FRVVLPVRSKNARGQQGSYPIKLFYTSNMPII----LQSALVSNLYFISQL-LYRKFSGN 318
Query: 502 SFCRIYRQ 525
F + Q
Sbjct: 319 FFVNLLGQ 326
>At1g56415.1 68414.m06488 Expressed protein
Length = 94
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 448 CVTN-SVGCNRLERSCYSNMIKIVPPQSV 365
C+ N VGC R +CY IK PPQS+
Sbjct: 66 CLRNCDVGC-RPSNTCYQRCIKHCPPQSL 93
>At4g14746.1 68417.m02269 expressed protein
Length = 250
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 616 PPNDLLVTGFDTEGLVNLTVDCFGPRFCFFTGGRYDR-NCSLETVCRIPLE 467
PP D + + FD + L++ + GPR G R + N SL R+ LE
Sbjct: 89 PPKDNITSFFDRKSLISFFLCFSGPRHIVPVGRRSEHVNISLFPRMRLELE 139
>At1g70100.3 68414.m08067 expressed protein
Length = 504
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 522 PVKKQKRGPKQSTVRFT---NPSVSKPVTSKSLGGTMPTVTKATPMSVSTSLAKWLLLQ* 692
P+KK + + + +R + N KPVTSK + G +K M+ +T+ A +L+
Sbjct: 235 PIKKTDKNVRTNHMRASPKSNQVTKKPVTSKVVSGRKTQPSKEKSMTKATNKAASPVLKP 294
Query: 693 P 695
P
Sbjct: 295 P 295
>At1g70100.2 68414.m08066 expressed protein
Length = 482
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 522 PVKKQKRGPKQSTVRFT---NPSVSKPVTSKSLGGTMPTVTKATPMSVSTSLAKWLLLQ* 692
P+KK + + + +R + N KPVTSK + G +K M+ +T+ A +L+
Sbjct: 235 PIKKTDKNVRTNHMRASPKSNQVTKKPVTSKVVSGRKTQPSKEKSMTKATNKAASPVLKP 294
Query: 693 P 695
P
Sbjct: 295 P 295
>At1g70100.1 68414.m08065 expressed protein
Length = 467
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 522 PVKKQKRGPKQSTVRFT---NPSVSKPVTSKSLGGTMPTVTKATPMSVSTSLAKWLLLQ* 692
P+KK + + + +R + N KPVTSK + G +K M+ +T+ A +L+
Sbjct: 235 PIKKTDKNVRTNHMRASPKSNQVTKKPVTSKVVSGRKTQPSKEKSMTKATNKAASPVLKP 294
Query: 693 P 695
P
Sbjct: 295 P 295
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,961,284
Number of Sequences: 28952
Number of extensions: 305539
Number of successful extensions: 950
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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