Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30413
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 149 3e-37
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 149 3e-37
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 149 3e-37
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 103 3e-23
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 93 3e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 4e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 39 7e-04
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 31 0.19
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 30 0.33
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 30 0.33
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.58
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 29 0.77
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 29 0.77
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.77
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.3
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 1.8
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 3.1
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 27 3.1
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 3.1
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 4.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 4.1
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 27 4.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 5.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 7.2
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 7.2
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 149 bits (362), Expect = 3e-37
Identities = 68/91 (74%), Positives = 77/91 (84%)
Frame = +2
Query: 509 GGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVS 688
GGIGTVPVGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVS
Sbjct: 255 GGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVS 314
Query: 689 VKELRRGYVAGDSKNNPPKGAADFTLKSLCL 781
VK++RRG V GDSKN+PP G A FT + + L
Sbjct: 315 VKDIRRGNVCGDSKNDPPMGCASFTAQVIIL 345
Score = 145 bits (351), Expect = 7e-36
Identities = 69/87 (79%), Positives = 79/87 (90%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVK
Sbjct: 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVK 146
Query: 181 QLIVGVNKMDSTEPPYSEPRFEEIKRK 261
QLIV VNKMD+T +S+ RFEEI ++
Sbjct: 147 QLIVAVNKMDTT--GWSQARFEEIVKE 171
Score = 137 bits (331), Expect = 2e-33
Identities = 57/85 (67%), Positives = 71/85 (83%)
Frame = +3
Query: 255 KEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEA 434
KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA
Sbjct: 170 KETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEA 229
Query: 435 LDAILPPARPTDKPLRLPLQDVYKM 509
+D+I PPARPTDKPLRLPLQDVYK+
Sbjct: 230 IDSIEPPARPTDKPLRLPLQDVYKI 254
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1
Query: 715 CW*LQKQPT*GCCRFYAQVIVLNHPGQIS 801
C + P GC F AQVI+LNHPGQIS
Sbjct: 324 CGDSKNDPPMGCASFTAQVIILNHPGQIS 352
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 149 bits (362), Expect = 3e-37
Identities = 68/91 (74%), Positives = 77/91 (84%)
Frame = +2
Query: 509 GGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVS 688
GGIGTVPVGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVS
Sbjct: 255 GGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVS 314
Query: 689 VKELRRGYVAGDSKNNPPKGAADFTLKSLCL 781
VK++RRG V GDSKN+PP G A FT + + L
Sbjct: 315 VKDIRRGNVCGDSKNDPPMGCASFTAQVIIL 345
Score = 145 bits (352), Expect = 6e-36
Identities = 70/87 (80%), Positives = 79/87 (90%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVK
Sbjct: 87 VTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVK 146
Query: 181 QLIVGVNKMDSTEPPYSEPRFEEIKRK 261
QLIV VNKMD+T +S+ RFEEI ++
Sbjct: 147 QLIVAVNKMDTT--GWSQARFEEIVKE 171
Score = 137 bits (331), Expect = 2e-33
Identities = 57/85 (67%), Positives = 71/85 (83%)
Frame = +3
Query: 255 KEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEA 434
KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA
Sbjct: 170 KETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEA 229
Query: 435 LDAILPPARPTDKPLRLPLQDVYKM 509
+D+I PPARPTDKPLRLPLQDVYK+
Sbjct: 230 IDSIEPPARPTDKPLRLPLQDVYKI 254
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1
Query: 715 CW*LQKQPT*GCCRFYAQVIVLNHPGQIS 801
C + P GC F AQVI+LNHPGQIS
Sbjct: 324 CGDSKNDPPMGCASFTAQVIILNHPGQIS 352
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 149 bits (362), Expect = 3e-37
Identities = 68/91 (74%), Positives = 77/91 (84%)
Frame = +2
Query: 509 GGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVS 688
GGIGTVPVGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVS
Sbjct: 255 GGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVS 314
Query: 689 VKELRRGYVAGDSKNNPPKGAADFTLKSLCL 781
VK++RRG V GDSKN+PP G A FT + + L
Sbjct: 315 VKDIRRGNVCGDSKNDPPMGCASFTAQVIIL 345
Score = 145 bits (351), Expect = 7e-36
Identities = 69/87 (79%), Positives = 79/87 (90%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVK
Sbjct: 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVK 146
Query: 181 QLIVGVNKMDSTEPPYSEPRFEEIKRK 261
QLIV VNKMD+T +S+ RFEEI ++
Sbjct: 147 QLIVAVNKMDTT--GWSQARFEEIVKE 171
Score = 137 bits (331), Expect = 2e-33
Identities = 57/85 (67%), Positives = 71/85 (83%)
Frame = +3
Query: 255 KEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEA 434
KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA
Sbjct: 170 KETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEA 229
Query: 435 LDAILPPARPTDKPLRLPLQDVYKM 509
+D+I PPARPTDKPLRLPLQDVYK+
Sbjct: 230 IDSIEPPARPTDKPLRLPLQDVYKI 254
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1
Query: 715 CW*LQKQPT*GCCRFYAQVIVLNHPGQIS 801
C + P GC F AQVI+LNHPGQIS
Sbjct: 324 CGDSKNDPPMGCASFTAQVIILNHPGQIS 352
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 103 bits (247), Expect = 3e-23
Identities = 47/95 (49%), Positives = 65/95 (68%)
Frame = +1
Query: 4 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 183
+++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G+
Sbjct: 319 SLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINH 378
Query: 184 LIVGVNKMDSTEPPYSEPRFEEIKRKYPHTSRRLA 288
L+V +NKMD +SE R++E K RR+A
Sbjct: 379 LVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA 413
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +2
Query: 515 IGTVPVGRVETGVLKPGTIVVFAPANITTEVKSV-EMHHEALQEAVPGDNVGFNVKNVSV 691
+GT+ G++E G +K + V+ P N T EV ++ + E + ++ GD V V+
Sbjct: 480 LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DD 538
Query: 692 KELRRGYVAGDSKN 733
+++ GYV +KN
Sbjct: 539 SDVQTGYVLTSTKN 552
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 93.5 bits (222), Expect = 3e-20
Identities = 45/81 (55%), Positives = 55/81 (67%)
Frame = +1
Query: 13 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 192
DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L LG+ +++V
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320
Query: 193 GVNKMDSTEPPYSEPRFEEIK 255
VNK+D +SE RF+EIK
Sbjct: 321 SVNKLDLMS--WSEDRFQEIK 339
Score = 51.6 bits (118), Expect = 1e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 273 IKKIGYNPAAVAFVPISGWHGDNMLEPSTK--MPWFKGWQVERKEGKADGKCLIEALDAI 446
IK +G+ + V FVPIS G N+++ + W+KG L+ ALD +
Sbjct: 347 IKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG------------PTLLSALDQL 394
Query: 447 LPPARPTDKPLRLPLQDVYK 506
+PP +P KPLRL + DVY+
Sbjct: 395 VPPEKPYRKPLRLSIDDVYR 414
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 73.3 bits (172), Expect = 4e-14
Identities = 36/75 (48%), Positives = 49/75 (65%)
Frame = +1
Query: 10 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 189
+D PGH D+IKNMITG + D A+++V+A G+ QTREH LLA +GVKQ++
Sbjct: 121 VDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIV 173
Query: 190 VGVNKMDSTEPPYSE 234
V +NK+D EP E
Sbjct: 174 VYINKVDMVEPDMIE 188
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +2
Query: 512 GIGTVPVGRVETGVLKPGTIV--VFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNV 685
G GTV GRVE G LK G + V +++ T V +EM + L AV GDN G ++++
Sbjct: 265 GRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDNCGLLLRSI 324
Query: 686 SVKELRRGYV 715
++L+RG +
Sbjct: 325 KREQLKRGMI 334
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/84 (26%), Positives = 38/84 (45%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
V+ +D PGH + M+ G + D A+L++A QT EH + +K
Sbjct: 110 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQLK 163
Query: 181 QLIVGVNKMDSTEPPYSEPRFEEI 252
+I+ NK+D +E ++ I
Sbjct: 164 HIIILQNKVDLIRESAAEEHYQSI 187
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 31.1 bits (67), Expect = 0.19
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 150
+ IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 147 INIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 30.3 bits (65), Expect = 0.33
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +1
Query: 292 TQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLT 471
T L L+ F T+T W++ PK L R R + A L N L + H P +
Sbjct: 360 TPLGELNWIFTAITDTIAWNVFPKHLFRRLFRQDLMVAALFRNFLLAERIMLVHSCHPQS 419
Query: 472 SPCVFPCKTYTKWWYW 519
SP + P + W W
Sbjct: 420 SPELPPTHDHPMWNSW 435
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 105
+T +D PGH F G + AD VL+VA G
Sbjct: 222 ITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.58
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 7 IIDAPGHRDFIKNMITGTSQADCAVLIV 90
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 29.1 bits (62), Expect = 0.77
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 200 TKWIPLNHHTVSPDLRKSKGSILI-HQEDWLQPSCCRFRAH 319
TK++ + H+ ++ L S+ ++I H ED L P+C RAH
Sbjct: 438 TKYVHMAHNYLNEKLSPSQAMVIISHYEDEL-PACVNRRAH 477
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 612 DLTSVVMLAGAKTTMVP--GFNTPVSTLPTGTVPIPPFCIRLAGEDAGACQWGGQVA 448
D+ + +M + +P G T S L GT+ L G AGAC++GG +A
Sbjct: 289 DIRTWIMFVSSVLLNIPNGGIGTFSSLLIKGTMGYDTLQTLLMGLPAGACEFGGLIA 345
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 0.77
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 181 QLIVGVNKMD 210
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -1
Query: 463 GRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 326
G GG S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 105
+ +ID+PGH DF + + + D A ++V A G
Sbjct: 96 INLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 90
V +ID+PGH DF + D A+++V
Sbjct: 100 VNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 105
+ +ID PGH DF ++ + + +L+V A G
Sbjct: 126 LNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 90
V +ID+PGH DF + D A+++V
Sbjct: 100 VNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 700 QFLDGHVLYVETYIVSRYSFLESFV 626
+F DGH+L ETY+ LES V
Sbjct: 527 KFFDGHLLASETYVGGHVESLESGV 551
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 10 IDAPGHRDFIKNMITGTSQADCAVLIV 90
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 311 ESDSSWVVANLLDV*GYFLLIS 246
E+D+ W V +D+ G FLL+S
Sbjct: 2 ENDTGWSVKKCIDIFGEFLLVS 23
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 606 TSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIP 511
+SVV+ + +T V + + VST TGTV +P
Sbjct: 86 SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVP 117
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 724 VTSNITTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRF 608
+T ++ + L H+ +++ SR +FL ++H+H F
Sbjct: 1012 LTQSLQSFSHLSNHIEVLDSTRQSRLTFLCHLILHMHGF 1050
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +3
Query: 354 STKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKMVVLVPCPS 533
S PW + ++VER+ + + ++ +D I P P + +R L VL P
Sbjct: 222 SQSCPWHRQYKVEREVSRIFHQDILHFIDYITP--TPEEHAVRKTLVSRINQAVLQKWPD 279
Query: 534 AEL 542
L
Sbjct: 280 VSL 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,634,183
Number of Sequences: 5004
Number of extensions: 80803
Number of successful extensions: 299
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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