Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30413
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                153   2e-37
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          108   4e-24
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             103   2e-22
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              37   0.017
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)       31   1.1  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.5  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   2.5  
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   29   4.4  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               29   4.4  
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)                 29   4.4  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)                   28   7.7  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)              28   7.7  
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)             28   7.7  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  153 bits (370), Expect = 2e-37
 Identities = 69/91 (75%), Positives = 80/91 (87%)
 Frame = +2

Query: 509 GGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVS 688
           GGIGTVPVGRVETGVLKPGT+V F+P+NITTEVKSVEMHHE+L EA+PGDNVGFNVKNVS
Sbjct: 116 GGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVKNVS 175

Query: 689 VKELRRGYVAGDSKNNPPKGAADFTLKSLCL 781
           VK+++RG VAGD KNNPPK    FT + + +
Sbjct: 176 VKDIKRGNVAGDFKNNPPKPCKSFTAQVIVM 206



 Score = 74.9 bits (176), Expect = 7e-14
 Identities = 35/63 (55%), Positives = 44/63 (69%), Gaps = 6/63 (9%)
 Frame = +3

Query: 339 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 500
           NM+  +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDV
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 501 YKM 509
           YK+
Sbjct: 113 YKI 115



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = +1

Query: 1   VTIIDAPGHRDFIKNMITGTSQ 66
           VT+IDAPGHRDFIKNMITGTSQ
Sbjct: 39  VTVIDAPGHRDFIKNMITGTSQ 60



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 727 QKQPT*GCCRFYAQVIVLNHPGQI 798
           +  P   C  F AQVIV+NHPG+I
Sbjct: 189 KNNPPKPCKSFTAQVIVMNHPGEI 212


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  108 bits (260), Expect = 4e-24
 Identities = 48/86 (55%), Positives = 64/86 (74%)
 Frame = +1

Query: 4   TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 183
           T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T GVK 
Sbjct: 225 TLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKH 284

Query: 184 LIVGVNKMDSTEPPYSEPRFEEIKRK 261
           L++ VNKMD     ++E R+EEIK K
Sbjct: 285 LVILVNKMDDPTVKWNEERYEEIKVK 310


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  103 bits (247), Expect = 2e-22
 Identities = 46/70 (65%), Positives = 57/70 (81%)
 Frame = +1

Query: 1   VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
           +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTREHA+L  +LGV 
Sbjct: 15  ITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVT 74

Query: 181 QLIVGVNKMD 210
           QLIV +NK+D
Sbjct: 75  QLIVAINKLD 84


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 19/81 (23%), Positives = 39/81 (48%)
 Frame = +1

Query: 10  IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 189
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 190 VGVNKMDSTEPPYSEPRFEEI 252
           +  NK+D  +   ++ ++++I
Sbjct: 123 ILQNKIDLVKESQAKDQYDQI 143


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +1

Query: 1   VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 181 QLIVGVNKMD 210
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
          Length = 1064

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -1

Query: 727 GVTSNITTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRFDFSSDVGGGKDNNGTWFQHT 548
           G T   TTT      V    T ++SRYS++E  + H + +   S        + TW Q  
Sbjct: 86  GQTDRRTTTHTATSVVENPYTSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLK 145

Query: 547 SFNSADGHGTN 515
            F++   H +N
Sbjct: 146 KFHATHYHPSN 156


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
 Frame = +1

Query: 457 PAPLTSPCVFPCKTYTKWWY-------WYRARRQS*NWCVETRYHCCLC 582
           P+   + C  P KT+  W +       W    +   NWC  T+   CLC
Sbjct: 289 PSKTQANCGHPTKTHANWCHPTTTHANWCYPTKTQANWCHPTKTQACLC 337


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 7   IIDAPGHRDFIKNMITGTSQADCAVLIV 90
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 1   VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 105
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 607 DFSSDVGGGKDNNGTWFQHTSFNSADGHGTNTTI---LYTSCRGRRRGLSVG 461
           DF+ DV    DNNG  +Q      ADG+  +T+    + TS RG+   L++G
Sbjct: 49  DFNKDVPDTSDNNG--YQEPDSEQADGYNYDTSHHNGVATSQRGQLARLAMG 98


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = -3

Query: 254 LISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLEIPASNSPVPA 93
           L+S N   L   ++E IL TPT    +    + K C      +   P   +   NSP+P+
Sbjct: 806 LLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPSVTNGNSPIPS 865

Query: 92  AT 87
            T
Sbjct: 866 GT 867


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +1

Query: 1   VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
           +  +D PGH  F      G    D  +++VAA             QT+E    A   GV 
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTKEAISHAQAAGV- 191

Query: 181 QLIVGVNKMD 210
            +I  +NK+D
Sbjct: 192 PIIFAINKID 201


>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
          Length = 665

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -2

Query: 708 PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT-PVSTLP 532
           P      +T    + TLSPGT +   +        S   +A  +TT+ P   T PV+TLP
Sbjct: 17  PETTVSPETTAVPETTLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLP 76

Query: 531 TGTVPIP 511
             +   P
Sbjct: 77  PDSTMAP 83


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
 Frame = +1

Query: 346 WSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCK-TYTKWWYWY 522
           ++L+P+C   R  R+ +R  +        +  P C+   P     + PC+ T     Y  
Sbjct: 179 YTLRPRCYTLRPCRYMLRPCRYMLRPCRYMLRPCCYTLRPCRY-MLRPCRYTLRPCRYTL 237

Query: 523 RARRQS*NWCVETRYHCCLCPRQHHY*SQICGDAPRSSPRSCTWRQCRF 669
           R  R +   C  T   C    R   Y  + CG   R  P   T R CR+
Sbjct: 238 RPCRYTLRPCRYTLRPCRYTLRPCGYTLRPCGYTLR--PHRYTLRPCRY 284


>SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)
          Length = 359

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = -2

Query: 564 PGFNTPVSTLPTGTVPIPPFCIRLAGEDAGACQWGGQVAGWHRE 433
           PG  TPV TL  G+ P+ P+   L     G    GGQV   HRE
Sbjct: 316 PGLRTPVITLSIGSSPLKPYSHLLLYVICG-YGLGGQVL-LHRE 357


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 327 WHGDNMLEPSTKMPWFKGWQVERKE 401
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
          Length = 1617

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 556 QHTSFNSADGHGTNTTILYTSCRGRRRGLSVGRA 455
           Q +S NS+ G G +T    +S   R RGL VG A
Sbjct: 418 QRSSVNSSPGEGADTNPPSSSSGERLRGLPVGHA 451


>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
          Length = 173

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 512 GIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGD 658
           G GT+  G + +G +     V      +T +VKS++M  + + +A  GD
Sbjct: 124 GQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKKPVDKASQGD 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,365,723
Number of Sequences: 59808
Number of extensions: 670807
Number of successful extensions: 2058
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2052
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)