Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30413
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 158 4e-39
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 158 4e-39
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 157 7e-39
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 147 7e-36
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 114 8e-26
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 114 8e-26
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 107 7e-24
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 70 2e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 70 2e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 62 6e-10
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 62 6e-10
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 62 6e-10
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 40 0.002
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 40 0.003
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 37 0.019
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 35 0.059
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.18
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 33 0.24
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.42
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 30 2.2
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 2.2
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 29 2.9
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.9
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.9
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.9
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.9
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 28 6.8
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 28 6.8
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 8.9
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 28 8.9
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 158 bits (384), Expect = 4e-39
Identities = 75/84 (89%), Positives = 78/84 (92%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVK
Sbjct: 87 ITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVK 146
Query: 181 QLIVGVNKMDSTEPPYSEPRFEEI 252
QLIV NKMDSTEPP+SE RF EI
Sbjct: 147 QLIVACNKMDSTEPPFSEARFTEI 170
Score = 147 bits (357), Expect = 7e-36
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +3
Query: 258 EVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEAL 437
EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EAL
Sbjct: 173 EVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEAL 232
Query: 438 DAILPPARPTDKPLRLPLQDVYKM 509
D+I+PP RPTD+PLRLPLQDVYK+
Sbjct: 233 DSIIPPQRPTDRPLRLPLQDVYKI 256
Score = 141 bits (341), Expect = 6e-34
Identities = 64/84 (76%), Positives = 72/84 (85%)
Frame = +2
Query: 509 GGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVS 688
GGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVS
Sbjct: 257 GGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVS 316
Query: 689 VKELRRGYVAGDSKNNPPKGAADF 760
VK++RRG V DSK +P K A F
Sbjct: 317 VKDIRRGSVCSDSKQDPAKEARTF 340
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1
Query: 757 FYAQVIVLNHPGQIS 801
F+AQVI++NHPGQIS
Sbjct: 340 FHAQVIIMNHPGQIS 354
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 158 bits (384), Expect = 4e-39
Identities = 75/84 (89%), Positives = 78/84 (92%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVK
Sbjct: 87 ITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVK 146
Query: 181 QLIVGVNKMDSTEPPYSEPRFEEI 252
QLIV NKMDSTEPP+SE RF EI
Sbjct: 147 QLIVACNKMDSTEPPFSEARFTEI 170
Score = 147 bits (357), Expect = 7e-36
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +3
Query: 258 EVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEAL 437
EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EAL
Sbjct: 173 EVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEAL 232
Query: 438 DAILPPARPTDKPLRLPLQDVYKM 509
D+I+PP RPTD+PLRLPLQDVYK+
Sbjct: 233 DSIIPPQRPTDRPLRLPLQDVYKI 256
Score = 141 bits (341), Expect = 6e-34
Identities = 64/84 (76%), Positives = 72/84 (85%)
Frame = +2
Query: 509 GGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVS 688
GGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVS
Sbjct: 257 GGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVS 316
Query: 689 VKELRRGYVAGDSKNNPPKGAADF 760
VK++RRG V DSK +P K A F
Sbjct: 317 VKDIRRGSVCSDSKQDPAKEARTF 340
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1
Query: 757 FYAQVIVLNHPGQIS 801
F+AQVI++NHPGQIS
Sbjct: 340 FHAQVIIMNHPGQIS 354
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 157 bits (382), Expect = 7e-39
Identities = 95/169 (56%), Positives = 106/169 (62%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVK
Sbjct: 87 ITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVK 146
Query: 181 QLIVGVNKMDSTEPPYSEPRFEEIKRKYPHTSRRLATTQLLSLSCPFLDGTETTCWSLQP 360
QL V+ T P S R + I+R + H S+ P D TETTC
Sbjct: 147 QL---VSLRSPTRSPDSSRRSDTIQRLF-HLSQ-----------SP--DSTETTCLRSPR 189
Query: 361 KCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYTK 507
C GSRDG + RK L E S +L PS H A LT VF + T+
Sbjct: 190 TCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCTR 238
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 147 bits (357), Expect = 7e-36
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +3
Query: 258 EVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEAL 437
EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EAL
Sbjct: 139 EVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEAL 198
Query: 438 DAILPPARPTDKPLRLPLQDVYKM 509
D+I+PP RPTD+PLRLPLQDVYK+
Sbjct: 199 DSIIPPQRPTDRPLRLPLQDVYKI 222
Score = 141 bits (341), Expect = 6e-34
Identities = 64/84 (76%), Positives = 72/84 (85%)
Frame = +2
Query: 509 GGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVS 688
GGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVS
Sbjct: 223 GGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVS 282
Query: 689 VKELRRGYVAGDSKNNPPKGAADF 760
VK++RRG V DSK +P K A F
Sbjct: 283 VKDIRRGSVCSDSKQDPAKEARTF 306
Score = 66.5 bits (155), Expect(2) = 2e-17
Identities = 29/31 (93%), Positives = 31/31 (100%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVA 93
+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 87 ITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 40.3 bits (90), Expect(2) = 2e-17
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 184 LIVGVNKMDSTEPPYSEPRFEEI 252
L+V NKMDSTEPP+SE RF EI
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEI 136
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1
Query: 757 FYAQVIVLNHPGQIS 801
F+AQVI++NHPGQIS
Sbjct: 306 FHAQVIIMNHPGQIS 320
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 114 bits (274), Expect = 8e-26
Identities = 53/85 (62%), Positives = 67/85 (78%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
+ ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV
Sbjct: 250 IVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVT 309
Query: 181 QLIVGVNKMDSTEPPYSEPRFEEIK 255
QLIV VNK+D+ + +S+ RF+EIK
Sbjct: 310 QLIVAVNKLDTVD--WSQDRFDEIK 332
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = +3
Query: 309 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLP 488
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D PLR+
Sbjct: 350 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 396
Query: 489 LQDVYKM 509
+ DV K+
Sbjct: 397 ISDVLKV 403
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 114 bits (274), Expect = 8e-26
Identities = 53/85 (62%), Positives = 67/85 (78%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
+ ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV
Sbjct: 268 IVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVT 327
Query: 181 QLIVGVNKMDSTEPPYSEPRFEEIK 255
QLIV VNK+D+ + +S+ RF+EIK
Sbjct: 328 QLIVAVNKLDTVD--WSQDRFDEIK 350
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = +3
Query: 309 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLP 488
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D PLR+
Sbjct: 368 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 414
Query: 489 LQDVYKM 509
+ DV K+
Sbjct: 415 ISDVLKV 421
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 107 bits (258), Expect = 7e-24
Identities = 53/112 (47%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Frame = +1
Query: 4 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 183
TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L T GVK
Sbjct: 190 TILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKH 249
Query: 184 LIVGVNKMDSTEPPYSEPRFEEIKRKYPHTSRRLA---TTQLLSLSCPFLDG 330
L++ VNKMD + E RF+EI+ K R+L T + + C L G
Sbjct: 250 LVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTG 301
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +2
Query: 515 IGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVK 694
+GTV +G++E+G ++ G +V P +V + + V GDN+ F +K +
Sbjct: 351 MGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEEN 410
Query: 695 ELRRGYV 715
EL+ G++
Sbjct: 411 ELQGGFI 417
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +3
Query: 258 EVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEA 434
+++ +++K+G+NP + +VP SG G + + T W G C IE
Sbjct: 275 KLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEG--NWY--------SGPCFIEF 324
Query: 435 LDAILPP-ARPTDKPLRLPLQDVY 503
+D +LP R + P+R + + Y
Sbjct: 325 IDVLLPSYKRDFNGPVRCTVAEKY 348
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/69 (52%), Positives = 44/69 (63%)
Frame = +1
Query: 13 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 192
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 193 GVNKMDSTE 219
+NK D E
Sbjct: 167 FINKADLVE 175
Score = 36.7 bits (81), Expect = 0.019
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 512 GIGTVPVGRVETGVLKPGTIVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNV 685
G GTV VG +E GVLK G V + T +++ ++++E GD+ G + V
Sbjct: 252 GRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRGV 311
Query: 686 SVKELRRGYVAG 721
++RG AG
Sbjct: 312 KGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/69 (52%), Positives = 44/69 (63%)
Frame = +1
Query: 13 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 192
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 193 GVNKMDSTE 219
+NK D E
Sbjct: 167 FINKADLVE 175
Score = 36.7 bits (81), Expect = 0.019
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 512 GIGTVPVGRVETGVLKPGTIVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNV 685
G GTV VG +E GVLK G V + T +++ ++++E GD+ G + V
Sbjct: 252 GRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRGV 311
Query: 686 SVKELRRGYVAG 721
++RG AG
Sbjct: 312 KGDTVKRGMWAG 323
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 61.7 bits (143), Expect = 6e-10
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +1
Query: 10 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQ 183
ID PGH D+IKNMITG +Q + A+L+VAA G QTREH LLA +GV
Sbjct: 117 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDN 169
Query: 184 LIVGVNKMDSTEPPYSEPR 240
++V +NK+D E P +E R
Sbjct: 170 IVVFMNKVD--EVPDAETR 186
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +2
Query: 512 GIGTVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNV 676
G GTV G++E G+LK G I + T VKSV E + + +A PGD +G +
Sbjct: 264 GRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLL 323
Query: 677 KNVSVKELRRGYV 715
+ + K++RRG V
Sbjct: 324 RGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 61.7 bits (143), Expect = 6e-10
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +1
Query: 10 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQ 183
ID PGH D+IKNMITG +Q + A+L+VAA G QTREH LLA +GV
Sbjct: 118 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDN 170
Query: 184 LIVGVNKMDSTEPPYSEPR 240
++V +NK+D E P +E R
Sbjct: 171 IVVFMNKVD--EVPDAETR 187
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +2
Query: 512 GIGTVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNV 676
G GTV G++E G+LK G I + T VKSV E + + +A PGD +G +
Sbjct: 265 GRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLL 324
Query: 677 KNVSVKELRRGYV 715
+ + K++RRG V
Sbjct: 325 RGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 61.7 bits (143), Expect = 6e-10
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +1
Query: 10 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQ 183
ID PGH D+IKNMITG +Q + A+L+VAA G QTREH LLA +GV
Sbjct: 118 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDN 170
Query: 184 LIVGVNKMDSTEPPYSEPR 240
++V +NK+D E P +E R
Sbjct: 171 IVVFMNKVD--EVPDAETR 187
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +2
Query: 512 GIGTVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNV 676
G GTV G++E G+LK G I + T VKSV E + + +A PGD +G +
Sbjct: 265 GRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLL 324
Query: 677 KNVSVKELRRGYV 715
+ + K++RRG V
Sbjct: 325 RGLGPKDVRRGCV 337
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/70 (40%), Positives = 33/70 (47%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 181 QLIVGVNKMD 210
QL+V VNK+D
Sbjct: 258 QLVVAVNKID 267
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 181 QLIVGVNKMDSTE 219
++I+ +NK D E
Sbjct: 127 RVIIVLNKCDLAE 139
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 512 GIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 676
G GTV G V GVL+ T + F N VK++E + + + G F V
Sbjct: 214 GQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 36.7 bits (81), Expect = 0.019
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 129 VSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQLN 182
Query: 181 QLIVGVNKMDSTEPPYSEPRFEEI 252
L++ NK+D + + +E+I
Sbjct: 183 HLMILQNKVDIIKESQARENYEQI 206
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 35.1 bits (77), Expect = 0.059
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +2
Query: 512 GIGTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQEAVPGDNVGFNVK 679
G+GT+ G + +G ++ I++ P + + +KS+ + G + F +K
Sbjct: 385 GVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCGQSASFALK 444
Query: 680 NVSVKELRRGYVAGDSKNNP 739
+ K++R+G V D K P
Sbjct: 445 KIPKKDVRKGMVLVDPKVKP 464
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 203 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 75
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 33.1 bits (72), Expect = 0.24
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +1
Query: 7 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 186
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 187 IVGVNKMDSTEPPYSEPR---FEEIKRKYP 267
++ +NK+D S PR +E +K + P
Sbjct: 605 VIALNKIDRLYEYESNPRKDVYELLKSQKP 634
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.42
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
+ +ID PGH DF + + D +L+VAA G QT + LAF +
Sbjct: 104 LNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKNI- 155
Query: 181 QLIVGVNKMD 210
Q+I +NK+D
Sbjct: 156 QIIPVINKID 165
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 512 GIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 676
G GTV G V GVL+ T + F N VK++E + + + G F V
Sbjct: 173 GQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 227
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 557 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 682
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Frame = -2
Query: 756 SAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASW---CISTDLTSVVMLA 586
S AP GGLF + T P + T F T +P T +T + L
Sbjct: 455 STAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLG 514
Query: 585 GAKTTMVPGFNTPVSTLPTGTVPIP 511
+T+ + P +T T T+P P
Sbjct: 515 QTPSTVSATPSLPTTTSTTSTLPKP 539
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/76 (27%), Positives = 30/76 (39%)
Frame = -2
Query: 756 SAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAK 577
+AAP GGLF + T P T F T +P TA+ + T + +
Sbjct: 473 AAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLPTTTST 532
Query: 576 TTMVPGFNTPVSTLPT 529
T+ +P P PT
Sbjct: 533 TSTLP---KPAEATPT 545
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 265 PHTSRRLATTQLLSLSCPFLD 327
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 265 PHTSRRLATTQLLSLSCPFLD 327
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 265 PHTSRRLATTQLLSLSCPFLD 327
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 265 PHTSRRLATTQLLSLSCPFLD 327
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Frame = +2
Query: 515 IGTVPVGRVETGVLKPGTIVVFAPANITT----EVKSVEMHHEALQEAVPGDNVGFNVKN 682
+G V G + G L G V+ P T V S+ +A+ PG+ ++
Sbjct: 416 VGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPGEAASISLNL 475
Query: 683 VSVKELRRGYVAGDSKNNPPKGAADFTLKSLCL 781
LRRG V + + PP +FT L L
Sbjct: 476 PDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLL 507
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 180
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 181 QLIVGVNKMD 210
I VNKMD
Sbjct: 166 PFICFVNKMD 175
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 28.3 bits (60), Expect = 6.8
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = -1
Query: 628 VVHLHRFDFSSDVGGGKDNNGTWFQHTSFNSADGHGTNTTI-LYTSCRGRRRGLSVGRAG 452
V H HR FS D G NG Q F N + + +GR+ S G +G
Sbjct: 557 VCHQHRESFSCDCPPGFYGNGCE-QEKMFRCLKSTCQNGGVCINEEEKGRKCECSYGFSG 615
Query: 451 GRMASRASMRHFPSALPSLRSTC 383
R + ++ F LRS C
Sbjct: 616 ARCEEKINLTGFTEKDSLLRSVC 638
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 28.3 bits (60), Expect = 6.8
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = -1
Query: 628 VVHLHRFDFSSDVGGGKDNNGTWFQHTSFNSADGHGTNTTI-LYTSCRGRRRGLSVGRAG 452
V H HR FS D G NG Q F N + + +GR+ S G +G
Sbjct: 557 VCHQHRESFSCDCPPGFYGNGCE-QEKMFRCLKSTCQNGGVCINEEEKGRKCECSYGFSG 615
Query: 451 GRMASRASMRHFPSALPSLRSTC 383
R + ++ F LRS C
Sbjct: 616 ARCEEKINLTGFTEKDSLLRSVC 638
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 1 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 96
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 1 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 105
+ +ID+PGH DF + D A+++V +G
Sbjct: 112 INLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,633,603
Number of Sequences: 27780
Number of extensions: 479754
Number of successful extensions: 1496
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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