Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30412
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    81   2e-16
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    33   0.048
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    27   2.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.6  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    26   7.4  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    26   7.4  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   7.4  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   9.7  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.7  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    25   9.7  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   9.7  

>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 35/74 (47%), Positives = 54/74 (72%)
 Frame = +1

Query: 508 MTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVKK 687
           +++CSEL+R +VNSV  G+Y  P      + ++++ F++L+LKND LR+ FD LKYD+K+
Sbjct: 163 LSLCSELARQSVNSVISGNYHIPFEALNTIQKVHSSFQVLSLKNDSLRRHFDGLKYDLKR 222

Query: 688 IEEVVYDLSIRGLL 729
            E+VVYDL I  L+
Sbjct: 223 SEDVVYDLRIHKLV 236



 Score = 33.9 bits (74), Expect = 0.028
 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
 Frame = +2

Query: 284 GYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIW---LEKGI-----LASHETMAEI 439
           G A L    P   Y+KY   W    Q+  YL  L  W   L+K +     L S   + +I
Sbjct: 83  GLAELASNFP---YYKYNGVWDRSIQKVVYLYLLASWTGRLDKSLRPTYSLLSLSEVGQI 139

Query: 440 LGVSPVELKEGFHLDIEDYL 499
           L V     +  FHL IE YL
Sbjct: 140 LQVPVFPEESTFHLSIEQYL 159


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 33.1 bits (72), Expect = 0.048
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 481  GH*RLSDWAM-TMCSELSRLAVNSVTRGDYERPLRISKFV-MELNAGFRLLNLKNDHLRK 654
            GH   SD  + T+ S   R  +N V R   E  L +   + M LN  F L   +ND    
Sbjct: 1757 GHPENSDSVLETISSVHHRSPINQVVRNLNESQLSLDSVISMNLNKEFALTKTENDFTDD 1816

Query: 655  RFDALKYDVKKIEEV 699
               AL Y  +K+EE+
Sbjct: 1817 NGRALNYFSQKLEEL 1831


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 114 KNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNE 227
           ++LD+  E+   + T CK+VD+I ++   ++  I   E
Sbjct: 280 RDLDKHDEVELLLETYCKQVDEIVQQTDNLVGNIRSTE 317


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 121 STKNKNYARRFGLYVKRLTKFLGK 192
           STK    A  +G YV++LTK + K
Sbjct: 699 STKTSKAASAYGAYVEQLTKLMDK 722


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +3

Query: 57  KHVKMCDNELINKIFSDFQKNLDQEQEL----RETIRTICKEVDQ 179
           K+  +C NE  NK++    K+++ ++++    +  I+ IC ++ Q
Sbjct: 261 KYKWLCINEKCNKLYGRHSKSINPQKQVCRLCKSQIKQICPKIKQ 305


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 232 PASL*CITWSTVVASREIWSTSLHI 158
           PA   C++W+ V  +  +WS+  HI
Sbjct: 136 PAKRLCLSWAIVGMNAWVWSSVFHI 160


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 233 HCSGMWQTRLLFEKAHDGYARLKDAVP 313
           HC  +W+   + E+A D + R K  +P
Sbjct: 71  HCPLLWKWSKVHEEAFDDFLRYKTRIP 97


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 278 GPSRKVDEFATCRSNAGFIV 219
           GPSR  D FAT R NA  I+
Sbjct: 373 GPSRVRDLFATARKNAPCII 392


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +2

Query: 302 DAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILAS-HETMAEILGVSPVELKEGFH 478
           DA+     F    H  F+T  Y Y I  T+ + KG   +   TM + L    +   +   
Sbjct: 137 DALLTVSLFGLFHHLMFLTTNYSYTINSTLDISKGFFINVLSTMVQALVTVTIAFTKFVT 196

Query: 479 LDIEDYL 499
           +D   Y+
Sbjct: 197 IDFPIYV 203


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 615 LQAIELEERSFAQTFRRPKVRREENRGSRLRSQHQ-GAAAQGRCGPRTR 758
           ++ + +++   +Q  ++ + ++ ENRGSR R + Q G    G   P  R
Sbjct: 66  IKYLRIQDEVLSQVAKQ-QAQQRENRGSRFRGRGQRGRGNYGHTAPNRR 113


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 263 VDEFATCRSNAGFIVVYYLEHCGRFPRNLVNLF 165
           VDE+ +    A FI   +LE    F  NL+NL+
Sbjct: 744 VDEYHSTLIIADFIQAGFLERDDAFTENLLNLY 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,214
Number of Sequences: 5004
Number of extensions: 63418
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)