Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30412
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329... 93 3e-19
01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906... 36 0.051
11_06_0051 - 19645726-19646007,19646045-19646513,19647749-196477... 28 7.7
07_03_0132 - 14011468-14012124 28 7.7
04_04_1517 + 34125549-34125634,34125725-34125789,34125878-341260... 28 7.7
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 28 7.7
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 28 7.7
>10_08_0176 +
15432092-15432470,15432592-15432688,15432801-15432985,
15433012-15433056,15433447-15433472,15435299-15435434,
15435608-15435702
Length = 320
Score = 92.7 bits (220), Expect = 3e-19
Identities = 38/73 (52%), Positives = 56/73 (76%)
Frame = +1
Query: 514 MCSELSRLAVNSVTRGDYERPLRISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVKKIE 693
M ++ R VN VT GDY+ P ++ F+ +L+A FR+LNL+ND LRK+FD +KYD++++E
Sbjct: 240 MSNDFPRYVVNRVTAGDYDCPRKVLSFLTDLHASFRMLNLRNDFLRKKFDGMKYDLRRVE 299
Query: 694 EVVYDLSIRGLLP 732
EV YD+ IRGL+P
Sbjct: 300 EVYYDVKIRGLVP 312
Score = 41.5 bits (93), Expect = 8e-04
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 287 YARLKDAVP--PTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVSPVE 460
Y+RL + + P Y++Y WR TQ ++A WLE G L H E LG P
Sbjct: 143 YSRLAEILKECPGQYYRYHGDWRSETQAVVSMLAFMHWLETGGLLMHAEAQEKLGCMPGP 202
Query: 461 LKEG-FHLD 484
G H+D
Sbjct: 203 CDGGVVHID 211
Score = 36.7 bits (81), Expect = 0.022
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 99 FSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGIAPACGK 254
F F+ LD+ LR+ IR + EV+ SR A+ L ++H +A GK
Sbjct: 81 FESFRAQLDESSTLRDRIRAVVSEVESASRVASAALLLVH-QPVPLADVLGK 131
>01_01_1144 -
9066832-9066935,9067968-9068169,9068265-9068414,
9068553-9068637,9069264-9069343,9069972-9070070
Length = 239
Score = 35.5 bits (78), Expect = 0.051
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +1
Query: 514 MCSELSRLAVNSVTRGDYERPLRISKFVMELNAGFRL---LNLKNDHLRKRFDALKYDVK 684
+ EL RLA+ ++ G+ E I FV ++ L L N ++K+ + + V
Sbjct: 142 LSGELMRLAIGRISDGEVEYAKNICAFVRDIYRELTLVVPLMDDNSEMKKKMETMLQSVV 201
Query: 685 KIEEVVYDLSIRG 723
KIE + + +RG
Sbjct: 202 KIENACFSVHVRG 214
>11_06_0051 -
19645726-19646007,19646045-19646513,19647749-19647771,
19647978-19648328
Length = 374
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 45 RLLIKHVKMCDNELINKIFSDFQKNLDQEQELRETIRTICKEVDQISREATTVL 206
+L + K NE IN+I F + +E+E R I +E+ + TTV+
Sbjct: 196 KLELMEAKRRQNEKINRILEKFNEMEKRERESMHRRRDIMEELSTSIKVTTTVI 249
>07_03_0132 - 14011468-14012124
Length = 218
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +3
Query: 546 LGDPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTFRRPKVRREENRGSRLRSQH-QG 722
+ +PR + A Q G +RRL+A EER + R R + R SR R H
Sbjct: 40 IAEPREVVATSTGAQA--GRQRRLEAAGAEEREGRRRERSSGGLRGKRRASRGRGGHCDA 97
Query: 723 AAAQGRCGPRT 755
G G R+
Sbjct: 98 GGGDGATGRRS 108
>04_04_1517 +
34125549-34125634,34125725-34125789,34125878-34126085,
34126819-34126911,34127302-34127389,34127788-34128060
Length = 270
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 583 ISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVKKIEEVVYDLSIRGLLPKG 738
+ K +EL AG R + + LRK+ A K+ ++ V+ D RGLL G
Sbjct: 109 VEKAAVELLAG-RAFTVSD--LRKKLRAKKFPDNAVDSVIADFKSRGLLNDG 157
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = +3
Query: 27 NKIKEPRLLIKHVKMCDNELINKIFSDFQKNLDQEQELR--ETIR-----TICKEVDQIS 185
+++++ RL +K +K +EL+ ++F Q ++E+E + ET+ E+ +S
Sbjct: 103 DELRKRRLPVKGLK---DELVRRLFESIQSEKEEEEEEQDNETVEVNPAANQASEIQSVS 159
Query: 186 REATTVLQVIH 218
+E T + +H
Sbjct: 160 QETTVSITEVH 170
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 540 RELGDPRRLRAPPEDL-QVRDGTER-RLQAIELEERSFAQT 656
+ELG+PRR R P+ L QV ER L E + R+F++T
Sbjct: 121 QELGNPRRGRPTPQVLKQVWQSGERYTLDQFESKSRAFSKT 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,818,316
Number of Sequences: 37544
Number of extensions: 419941
Number of successful extensions: 1166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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