Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30412
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37452| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   1.5  
SB_32794| Best HMM Match : Gam (HMM E-Value=5.8)                       30   2.6  
SB_21193| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         28   7.9  

>SB_37452| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 211

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 290 RIHRGPSR-KVDEFATCRSNAGFIVVYYLEHCGRFP 186
           R+H+G  R +  +   C S AG++ V+Y  H G  P
Sbjct: 24  RLHKGEKRYQCQQCGKCFSKAGYLTVHYRYHTGERP 59


>SB_32794| Best HMM Match : Gam (HMM E-Value=5.8)
          Length = 511

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 503 QSDSLQCPNGNLLLTPLD*HLIFQPWSRVK 414
           +SDSL+CP+ N L+   D   +F  W+ +K
Sbjct: 470 ESDSLECPSHNELIHNEDKEEVFDEWNLIK 499


>SB_21193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 503 QSDSLQCPNGNLLLTPLD*HLIFQPWSRVK 414
           +SDSL+CP+ N L+   D   +F  W+ +K
Sbjct: 280 ESDSLECPSHNELIHNEDKEEVFDEWNLIK 309


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 90   NKIFSDFQKNLDQEQELRETIRTICKEVDQISRE 191
            N    +   N ++ Q+LRE    ICKE +Q+ RE
Sbjct: 1299 NTSLEEKDNNEEEVQQLREWYDVICKEKEQLERE 1332


>SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 588 QVRDGTERRLQAIELEERSFAQTFRRPKVRREENRGSRLRSQHQGAAAQGRCG 746
           +VR+G E  L  +E   R+  +  R+P+    E RG   R  H+G     R G
Sbjct: 277 EVREGAEVAL-LLETLRRAALEHGRKPRTEGRERRGREERIYHEGRREGKRLG 328


>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 510  DDVLRIVSSGRELGDPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTFRRPKVRREEN 689
            +D+ R   S     D  R+R   +D + R+  ERRL+  E E+R   +   R K R +++
Sbjct: 1130 EDLRRRSDSWHRRDDEERMRREEKDARRREEEERRLR--EEEDRLRREDELRRK-REDDD 1186

Query: 690  RGSR 701
            RG R
Sbjct: 1187 RGRR 1190


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/48 (22%), Positives = 27/48 (56%)
 Frame = +3

Query: 54   IKHVKMCDNELINKIFSDFQKNLDQEQELRETIRTICKEVDQISREAT 197
            I  ++  D+E++  +  D +K LD+  E+R  +  I  +++++  + T
Sbjct: 1279 IATLRALDDEILKLLVEDLEKFLDEVDEMRGKLHKIVFKIEELLSQKT 1326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,730,745
Number of Sequences: 59808
Number of extensions: 482401
Number of successful extensions: 1474
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)