Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30412
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    33   0.18 
AC091125-2|AAK27887.2|  202|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z79754-12|CAD57695.1|  440|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z79754-11|CAB02100.1|  478|Caenorhabditis elegans Hypothetical p...    28   7.0  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    28   9.2  

>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 23/68 (33%), Positives = 36/68 (52%)
 Frame = +3

Query: 540 RELGDPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTFRRPKVRREENRGSRLRSQHQ 719
           +++ +P + RAPP   Q    T  R+Q  +    S A T+ +P +RR+ + GSR  S   
Sbjct: 299 QQVSEPTK-RAPPTAAQTASSTSSRIQHNQTLNNSNA-TYAQPIIRRQPSYGSRSSSI-- 354

Query: 720 GAAAQGRC 743
            A +Q RC
Sbjct: 355 -ATSQMRC 361


>AC091125-2|AAK27887.2|  202|Caenorhabditis elegans Hypothetical
           protein Y67D2.5 protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 39  EPRLLIKHVKMCDNELINKIFSDFQKNLDQEQELRETIR 155
           EP  + K+ K  +NE I ++    Q +LD+E E+++T R
Sbjct: 20  EPCHVAKYHKWMENEEIRRLTGSEQLSLDEEYEMQKTWR 58


>Z79754-12|CAD57695.1|  440|Caenorhabditis elegans Hypothetical
           protein F25H2.12b protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 604 LNAGFRLLNLKNDHLRKRFDALK-YDVKKIEEVVYDLSI 717
           LNA FR ++  N  +RKR  A K +++ +I E++  + I
Sbjct: 68  LNASFRTISSANGLVRKRIKAKKQHEIDRIVELISQIQI 106


>Z79754-11|CAB02100.1|  478|Caenorhabditis elegans Hypothetical
           protein F25H2.12a protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 604 LNAGFRLLNLKNDHLRKRFDALK-YDVKKIEEVVYDLSI 717
           LNA FR ++  N  +RKR  A K +++ +I E++  + I
Sbjct: 106 LNASFRTISSANGLVRKRIKAKKQHEIDRIVELISQIQI 144


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 66   KMCDNELINKIFSDFQKNLDQEQELRE--TIRTICKEVD 176
            KM D E   K   D QKN+DQEQE  E  T   + KE D
Sbjct: 3719 KMWDEE--EKEEQDQQKNMDQEQEAAEDQTDEMVAKEDD 3755


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,598,328
Number of Sequences: 27780
Number of extensions: 355887
Number of successful extensions: 1098
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)