Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30412
         (815 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37020.1 68415.m04540 translin family protein similar to SP|Q...    96   2e-20
At2g03780.1 68415.m00338 translin family protein similar to SP|Q...    38   0.011
At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I...    29   2.8  
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain...    29   2.8  
At3g50620.1 68416.m05535 nodulation protein-related contains wea...    29   4.9  
At5g52280.1 68418.m06488 protein transport protein-related low s...    28   6.4  
At5g38350.1 68418.m04628 disease resistance protein (NBS-LRR cla...    28   8.5  

>At2g37020.1 68415.m04540 translin family protein similar to
           SP|Q62348 Translin {Mus musculus}; contains Pfam profile
           PF01997: Translin family
          Length = 238

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 40/76 (52%), Positives = 59/76 (77%)
 Frame = +1

Query: 514 MCSELSRLAVNSVTRGDYERPLRISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVKKIE 693
           M ++L R  VN VT GDY+ P ++  F+ +L+A FR+LNL+ND LRK+FD++KYD++++E
Sbjct: 152 MSNDLPRYVVNRVTAGDYDCPRKVMNFLTDLHAAFRMLNLRNDFLRKKFDSMKYDLRRVE 211

Query: 694 EVVYDLSIRGLLPKGD 741
           EV YD+ IRGL+  GD
Sbjct: 212 EVYYDVKIRGLISGGD 227



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +2

Query: 287 YARLKDAVP--PTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVSPVE 460
           Y RL + +   P  Y++Y   WR  TQ     +A   WLE G L  H    E LG++ +E
Sbjct: 78  YGRLAEILEECPGQYYRYHGDWRSETQAVVSQLAFMHWLETGTLLVHTEAEEKLGLNSLE 137

Query: 461 LKEGFHLDIEDYLIGL 508
               F L+ EDYL G+
Sbjct: 138 ----FGLETEDYLTGI 149



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 87  INKIFSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIH 218
           + K F  F+  L++   LRE IR +  E++  +R     L ++H
Sbjct: 12  LEKQFESFRVQLEESAALREQIRAVVMEIESATRLIQANLLLVH 55


>At2g03780.1 68415.m00338 translin family protein similar to
           SP|Q99598 Translin-associated protein X
           (Translin-associated factor X) {Homo sapiens}; contains
           Pfam profile PF01997: Translin family
          Length = 287

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +1

Query: 514 MCSELSRLAVNSVTRGDYERPLRISKFVMELNAGFRLLNLKNDH---LRKRFDALKYDVK 684
           +  EL R+A+  ++ G+ E   RI +FV +++    L+  K D    ++ + + +   V 
Sbjct: 192 LTGELMRMAIGRISDGEIEFAQRICQFVRQIHRELMLVVPKMDDSYDMKSKMEVMLQSVI 251

Query: 685 KIEEVVYDLSIRGL 726
           KIE   + + +RGL
Sbjct: 252 KIENACFSVHVRGL 265


>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
           GI:9651815 from [Arabidopsis thaliana]; identical to
           cDNA DNA ligase IV, GI:9651814
          Length = 1219

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 636 LQVQ*PEAGVQFHHELGDPQGALVVAAGHRVHGQTRQF*AHRHSPIR*SSM-SKWKPSFN 460
           L+V  PE G+  H   G+P  ++VV A   V    ++   +R   I    + SKW+P   
Sbjct: 375 LEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGIVLKDLESKWEPGDR 434

Query: 459 S 457
           S
Sbjct: 435 S 435


>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
           protein similar to Sin3 protein [Yarrowia lipolytica]
           GI:18076824; contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 1173

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
 Frame = +1

Query: 97  YSVTSKRISTKNKNYARRFGLYVKRLTKFLGKRPQCSK*YTTMKPALLRHVANSSTFREG 276
           Y    K IS   +     F  +   L +F+   P C +   + K A+ RH   ++T    
Sbjct: 197 YRKEKKSISEVYEEVTMLFKGHEDLLMEFVNFLPNCPESAPSTKNAVPRHKGTATTAMHS 256

Query: 277 PRWIRKTERCCTTNRLLQVSGSLEIHDP--TLLLSDSAHYMAREGNPGFTRDH 429
            +  ++ +RC    +L   SG  +  +     L++ SA     EG PG+ RD+
Sbjct: 257 DK--KRKQRC----KLEDYSGHSDQREDGDENLVTCSADSPVGEGQPGYFRDY 303


>At3g50620.1 68416.m05535 nodulation protein-related contains weak
           similarity to nodulation protein H (EC 2.8.2.-)
           (Host-specificity of nodulation protein D)
           (Swiss-Prot:P06237) [Rhizobium meliloti]
          Length = 340

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 519 AHRHSPIR*SSMSKWKPSFNSTGLTPNISAMVSCEAR 409
           +H HSP    ++S++KP  NST L  ++    +  A+
Sbjct: 226 SHVHSPAEADALSRYKPVINSTSLIHDLQETENSAAK 262


>At5g52280.1 68418.m06488 protein transport protein-related low
           similarity to  SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 853

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 601 ELNAGFRLLNLKNDHLRKRFDALKYDVKKIEE 696
           EL   F    ++ND LRK+   LK D+++ EE
Sbjct: 740 ELQNSFVQEKMENDELRKQVSNLKVDIRRKEE 771


>At5g38350.1 68418.m04628 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 833

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 389 IWLEKGILASHETMAEI---LGVSPVELKEGFHLDIEDYLIGL*RCAQNC 529
           ++L    L +++ M E+   L +S +++++GFHL  E  LI L   + NC
Sbjct: 276 LFLHIACLFNNQEMVEVEDYLALSFLDVRQGFHLLAEKSLINLKFLSTNC 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,600,859
Number of Sequences: 28952
Number of extensions: 333320
Number of successful extensions: 1003
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)