Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30411
         (688 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    41   0.033
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    36   0.93 
UniRef50_Q2GAD1 Cluster: Glycosyl transferase, group 1; n=1; Nov...    36   1.2  
UniRef50_Q8RL77 Cluster: HpaG; n=13; Xanthomonas|Rep: HpaG - Xan...    33   4.9  
UniRef50_Q987I8 Cluster: ABC transporter, binding protein; n=11;...    33   6.5  
UniRef50_Q23BT8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  
UniRef50_A4CTF3 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 40.7 bits (91), Expect = 0.033
 Identities = 18/23 (78%), Positives = 18/23 (78%)
 Frame = +2

Query: 557 MGDRNHSPSGGPYARLPTRAIKK 625
           MGD NHSPSG PYA LPTRA  K
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMK 23


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 35.9 bits (79), Expect = 0.93
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +1

Query: 514  GRQRLGSAPGIAEVDGR 564
            GRQRLGSAPGIAEV GR
Sbjct: 969  GRQRLGSAPGIAEVHGR 985


>UniRef50_Q2GAD1 Cluster: Glycosyl transferase, group 1; n=1;
           Novosphingobium aromaticivorans DSM 12444|Rep: Glycosyl
           transferase, group 1 - Novosphingobium aromaticivorans
           (strain DSM 12444)
          Length = 426

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = -1

Query: 253 ILKITTLC*--ARQYRNVS--SKNKWGPKYVIKKIMIEGLLVARRPFQFH--QDRWASKG 92
           IL    LC   ARQ R +   S   WG  +   +  +E L   RRPF FH   DR ++  
Sbjct: 345 ILSFLDLCPERARQLRMLKEYSAPTWGGHFAQVESWLEELRTVRRPFMFHPGPDRRSTPV 404

Query: 91  SAKRGGIG*QLPERLR-SRP 35
             +R G     P+RL+ SRP
Sbjct: 405 VVRRDGAERHAPDRLQTSRP 424


>UniRef50_Q8RL77 Cluster: HpaG; n=13; Xanthomonas|Rep: HpaG -
           Xanthomonas euvesicatoria
          Length = 432

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +2

Query: 533 LPLALLKSMGDRNHSPSGGPYARLPTRAIKKGRKKKLIITFS 658
           LP  L +  G RN S  GG YARLP R ++  R  +L ++ S
Sbjct: 7   LPADLGRMQGLRNLSLGGGHYARLPARIVELSRLSELRMSHS 48


>UniRef50_Q987I8 Cluster: ABC transporter, binding protein; n=11;
           Alphaproteobacteria|Rep: ABC transporter, binding
           protein - Rhizobium loti (Mesorhizobium loti)
          Length = 505

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 582 DGEWLRSPIDFSNARGRAKPLPTMPLEYISNIPFN 478
           D  WL++PI F N   R  P     L Y SN P+N
Sbjct: 389 DNYWLKAPIHFGNINPRPTPDILFSLLYASNAPWN 423


>UniRef50_Q23BT8 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 775

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 16/57 (28%), Positives = 33/57 (57%)
 Frame = -1

Query: 277 SLERLNVYILKITTLC*ARQYRNVSSKNKWGPKYVIKKIMIEGLLVARRPFQFHQDR 107
           S E+++++  +   +C  ++ + +S +NK   KY IKK++ EG L      + H++R
Sbjct: 242 SREKISIFARRKRKICIEQKKKKISDQNK--QKYRIKKLITEGNLTPEDVQKIHEER 296


>UniRef50_A4CTF3 Cluster: Putative uncharacterized protein; n=1;
           Synechococcus sp. WH 7805|Rep: Putative uncharacterized
           protein - Synechococcus sp. (strain WH7805)
          Length = 63

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -1

Query: 190 WGPKYVIKKIMIEGLLVARRPFQFHQDRWASKGSAKRGGIG---*QLPERLRSRP 35
           WG    +  +++ G+ + R PF++    W  +G+A  G IG    Q+  R+  RP
Sbjct: 9   WGTALALLVVLLIGIQLGRLPFRYRHSLWQLQGAALGGVIGFALGQVSARIGRRP 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,767,484
Number of Sequences: 1657284
Number of extensions: 13911443
Number of successful extensions: 34404
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34399
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)