Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30411
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   1.9  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    27   2.5  
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 536 AEPSRCLPCHLNTFQI-FH--STDTYFEPTXXXXXX*SASEPRYNGSST 399
           A+P+ C+PC L T  I FH  S+ ++ +P          + P ++ SS+
Sbjct: 14  AQPNLCIPCSLGTCLIHFHEFSSSSFMDPVSLFCSSPYPNLPPHSRSSS 62


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -1

Query: 328 YPKALSLFQFHCNISSTSLERLNVYILKITTLC*ARQYRNVSSKNKWGPKYVIKKIMIEG 149
           YP  L  + FH N  S+   RL    + + T    +   NV+S +   P+Y I  + +  
Sbjct: 266 YPLRLQGYDFHANSGSSYTSRLKSLWMGMLT----QAVSNVTSAHALFPQYRIDMLTLR- 320

Query: 148 LLVARRPFQFHQDRW 104
            +  + PF F   R+
Sbjct: 321 -MKVKDPFSFDMFRF 334


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 324 GYAFLYSLVGGKAYECIIILRDDIV 398
           GY  +YS+    ++E + I+RD I+
Sbjct: 80  GYVLVYSITSKSSFEMVKIVRDKIL 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,492
Number of Sequences: 5004
Number of extensions: 56999
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)