Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30411
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     30   2.0  
03_02_0715 + 10621789-10623243,10624074-10625018                       28   6.0  
01_07_0226 + 42130300-42131430,42131530-42131715,42133244-421333...    28   6.0  

>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +2

Query: 491 FEMYSSGM---VGSGLALPLALLKSMGDRNHSPSGGPYARLPTRAIKKGR 631
           +E Y  G+    GS LA  L LL  M      PSG  YARL     + GR
Sbjct: 52  WESYDRGIQHHAGSDLASSLRLLADMQAAGLRPSGAAYARLIRALARAGR 101


>03_02_0715 + 10621789-10623243,10624074-10625018
          Length = 799

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 605 PTRAIKKGRKKKLIITFS 658
           PTR IKKGRKK++ ++ S
Sbjct: 337 PTRVIKKGRKKRVFVSDS 354


>01_07_0226 +
           42130300-42131430,42131530-42131715,42133244-42133345,
           42133425-42133481,42133563-42133658,42133736-42133828,
           42133945-42134064,42134155-42134187,42134266-42134316,
           42135129-42135191
          Length = 643

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +2

Query: 509 GMVGSGLALPLALLKSMGDRNHSPSGGPYARLPTRAIKKGRKKK 640
           G  GSG   P    +S G R    S G  AR P R +K+ +KKK
Sbjct: 26  GASGSGQDAPADQQESDGKRGQHRSPGDEAR-PDRQLKRRKKKK 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,364,938
Number of Sequences: 37544
Number of extensions: 389670
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)