Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30411
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)                 29   4.7  
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)                      28   6.2  

>SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)
          Length = 658

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 421 HGTMVQVPTMSSRKMMIHSYALPPTKL*RNAYPKALSLFQFHCNI 287
           + T++ V  M++   +I SYA+  T L + AY + + +F   C++
Sbjct: 374 NATLLLVANMAASDFLISSYAIILTTLRKMAYSEFIGIFTGACSV 418


>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 298 HCNISSTSLERLNVYILKITTLC*ARQYRNVSSKNKWGPKY 176
           +CN+  +SL   +V+ L     C +R YR+ +S    GPKY
Sbjct: 727 NCNLVGSSL--YHVFCLVFLVGCPSRTYRSQASGEASGPKY 765


>SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)
          Length = 105

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 602 DEHTAHLMVSGYGRPSTSAMPGAEPSRCL 516
           + +T + + +GYG   +S  PG EP +CL
Sbjct: 13  NNNTEYRLQAGYGLRFSSKRPGYEPGQCL 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,627,788
Number of Sequences: 59808
Number of extensions: 439367
Number of successful extensions: 839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)