Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30411
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    28   5.0  
At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   6.7  
At2g42700.1 68415.m05287 expressed protein                             28   6.7  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    27   8.8  
At5g04770.1 68418.m00492 amino acid permease family protein simi...    27   8.8  
At2g22530.1 68415.m02672 phosphatidylinositolglycan-related simi...    27   8.8  
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont...    27   8.8  

>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 618 IALVGRRAYGPPDGEWLR-SPIDFSNARGRA 529
           + + G + Y P  GEW+  SP+D     GRA
Sbjct: 851 VIIKGTQVYNPERGEWMELSPLDVMQMIGRA 881


>At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to SP|Q9ZWQ9 Flavonol synthase
           (EC 1.14.11.-) {Citrus unshiu}; contains Pfam profile
           PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 364

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 533 LPLALLKSMGDRNHSPSGGPYARLPTRAIKKGRKKKL-IITF 655
           LP AL+ ++GD     S G Y  +  RA+    K++L I+TF
Sbjct: 268 LPNALVINIGDTIEVLSNGKYKSVEHRAVTNREKERLTIVTF 309


>At2g42700.1 68415.m05287 expressed protein 
          Length = 788

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 156 LKDYWWPGGLSSFTRTGGRAKAQPREVGLANSCPSASEADLT 31
           ++D   P G+ +F R      + P+ VGL N C   S  + T
Sbjct: 319 IRDSGLPEGIEAFLRGWDSYTSAPQNVGLFNECDKKSTTNWT 360


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
            contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 567  RSPI-DFSNARGRAKPLPTMPLEYISNIP 484
            RSPI D S   GR KP+   PLE +S+ P
Sbjct: 1144 RSPIKDLSVDDGRPKPIALKPLEKLSSKP 1172


>At5g04770.1 68418.m00492 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 583

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 164 FFYYVLWSPLIFTRYVPVLPS 226
           F +Y++ + LIF RYVPV P+
Sbjct: 427 FVFYMVANALIFRRYVPVGPT 447


>At2g22530.1 68415.m02672 phosphatidylinositolglycan-related similar
           to Pig-o [Mus musculus] GI:8099973
          Length = 897

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 156 IIIFFITYFGPHLFLLDTFLYCRA 227
           I++F ITY  P LFLL   +Y  A
Sbjct: 814 ILMFMITYASPMLFLLSLVMYIGA 837


>At1g74190.1 68414.m08592 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 965

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = -1

Query: 316 LSLFQ--FHCNISSTSLERL-NVYILKITTLC*ARQYRNVSSKNKWGPKYVIKKIMIEGL 146
           LSLF   F  + S  SL  L N+ +LK   LC       V S++ W PK+ +  I +   
Sbjct: 297 LSLFDNDFEGSFSFGSLANLSNLMVLK---LCSKSSSLQVLSESSWKPKFQLSVIALRSC 353

Query: 145 LVARRP-FQFHQ 113
            + + P F  HQ
Sbjct: 354 NMEKVPHFLLHQ 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,483
Number of Sequences: 28952
Number of extensions: 301741
Number of successful extensions: 645
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)