Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30410
         (670 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4N3Y0 Cluster: Glyceraldehyde-3-phosphate dehydrogenas...    34   3.6  
UniRef50_UPI0000ECA91C Cluster: Peroxisomal proliferator-activat...    33   6.2  
UniRef50_UPI00006CBCDC Cluster: cation channel family protein; n...    33   8.2  
UniRef50_Q8MR31 Cluster: Slo-interacting protein 1; n=2; Drosoph...    33   8.2  

>UniRef50_Q4N3Y0 Cluster: Glyceraldehyde-3-phosphate dehydrogenase,
           putative; n=1; Theileria parva|Rep:
           Glyceraldehyde-3-phosphate dehydrogenase, putative -
           Theileria parva
          Length = 338

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -3

Query: 197 FVKEKVQYSAIHSKTPYSLLYPVNILLLN 111
           +VK  +QY +++ K PY+LL   N LLLN
Sbjct: 42  YVKYLLQYDSVYGKLPYTLLLEENFLLLN 70


>UniRef50_UPI0000ECA91C Cluster: Peroxisomal proliferator-activated
           receptor A-interacting complex 285 kDa protein (EC
           3.6.1.-) (ATP-dependent helicase PRIC285) (PPAR-alpha-
           interacting complex protein 285) (PPAR-gamma
           DBD-interacting protein 1) (PDIP1).; n=3; Amniota|Rep:
           Peroxisomal proliferator-activated receptor
           A-interacting complex 285 kDa protein (EC 3.6.1.-)
           (ATP-dependent helicase PRIC285) (PPAR-alpha-
           interacting complex protein 285) (PPAR-gamma
           DBD-interacting protein 1) (PDIP1). - Gallus gallus
          Length = 2565

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 43  YH*TLNLVIQFLSKQQHSVAAKQFSNNIFT-GYNNEYGVFEWIAEYW 180
           YH  LN + QF  K++H VA K  S  IF   Y +  G+ E++++++
Sbjct: 710 YHTLLNRLFQFYQKEKHEVAMK--SRIIFNENYRSTAGIIEFVSKHF 754


>UniRef50_UPI00006CBCDC Cluster: cation channel family protein; n=1;
           Tetrahymena thermophila SB210|Rep: cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 1329

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 215 IIVFFCFVKEKVQYSAIHSKTPYSLLYPVNILLLNCFAATECCCFDRNCITKF 57
           II F  F+K K  Y++I  K   SL +PV+  + N   A         CI ++
Sbjct: 318 IIFFIRFIKFKSMYNSIEEKFQLSLRFPVSFTITNLILAITILAHVFGCIFQY 370


>UniRef50_Q8MR31 Cluster: Slo-interacting protein 1; n=2; Drosophila
           melanogaster|Rep: Slo-interacting protein 1 - Drosophila
           melanogaster (Fruit fly)
          Length = 767

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -2

Query: 648 LNPRPPKEN*KHTPTFYPLILT*YNISNSSRPTSKCQANESETSNVALQRGDKISGLNLV 469
           L  +P  ++  H P F    L+ Y+  +S    ++C  + S   N  L  G+    + +V
Sbjct: 631 LRVKPTDDSYSHCPQFNAPNLSSYHFVSSQEVANRCHISTSLQKNATLLNGESAEEIPMV 690

Query: 468 YRVNR 454
           ++V R
Sbjct: 691 WKVKR 695


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,145,703
Number of Sequences: 1657284
Number of extensions: 10948949
Number of successful extensions: 24802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24794
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)