Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30410
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 27 2.4
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 27 2.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 4.3
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 4.3
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 4.3
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 26 4.3
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 26 4.3
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 26 5.6
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 26 5.6
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 7.5
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 444 FINRDSLDILNLSPRFYLRAAKLR*RSQ 527
++N D +DI++ P FY R KL ++Q
Sbjct: 25 YVNVDDIDIIHEPPEFYQRLKKLIKKAQ 52
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 615 HTPTFYPLILT*YNISNSSRP-TSKCQA--NESETSNVALQRGDKIS 484
HT +F P+IL YN+ N P S+ A + +V + RGD +S
Sbjct: 332 HTLSFRPIILPDYNVLNVEIPLDSRSSAFFSVDRHESVEMHRGDYLS 378
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 177 LDFFFYKTKKNNDALNAVLLMKRYRPSVQWMPNVLTKQAKMDRYYRN 317
++F ++ D+L +VL + RY P W+ + L + K N
Sbjct: 2691 MEFTLETLRREEDSLLSVLEVLRYDPLFSWLISPLRRMKKQKMQLEN 2737
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 240 SLVGLHLTHHCFFLFCKRKSPIFRYPFENTIFIIISCKYII 118
+ GL++ H F L PI N+IF+I+S Y I
Sbjct: 1273 TFTGLYIVHLLFLLTIFYPCPIAYTYVRNSIFLILSICYTI 1313
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +3
Query: 165 DSGILDFFFYKTKKNNDALNAVLLMKRYRPSVQWMPNVLTK 287
D+ + +Y+TK+ ++ + + Y V W+ N+L K
Sbjct: 626 DTSSCGYAYYETKRELLSIEIKVTRENYEKGVYWIRNLLAK 666
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 502 LQSYVRGLRFICLTFASGSRRIADI 576
LQ ++ GL+ CL F S S +A I
Sbjct: 964 LQQFLEGLKIYCLPFFSSSNNLAVI 988
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 26.2 bits (55), Expect = 4.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 252 PSVQWMPNVLTKQAKMDR 305
P +QW+ N+LT +A+ +R
Sbjct: 138 PQIQWVENILTHKAEAER 155
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 438 YKFINRDSLDILNLSPRFYLRAAKLR*RSQIHL-PDIC*WVAKNC*Y 575
YK+ NR LN +LR ++R +HL P+ W+ KNC Y
Sbjct: 34 YKYTNRSPKMALNQEAYNWLRE-QIRGLRNLHLLPEEEQWLRKNCPY 79
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 161 SKTPYSLLYPVNILLLNCFAATECCCFDRNC 69
+K P + P+N++LL F C C NC
Sbjct: 57 TKKPIRSVVPLNVMLLPIFLLCRCIC-KSNC 86
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 283 QNRLKWTDTIETNNNKINISNA 348
QN+L W T + +N +NI NA
Sbjct: 384 QNQLLWPSTFDDDNFTLNIMNA 405
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 313 ETNNNKINISNALWFPLISNRPHETVCHKNYK 408
+TN + +N+ +++ ++S+ E CHK K
Sbjct: 404 QTNASLVNLRKSIYLTIMSSVDFEECCHKLLK 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,157
Number of Sequences: 5004
Number of extensions: 50326
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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