Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30410
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)                 29   3.4  
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   28   7.9  

>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
          Length = 312

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 669 RPNQPKQLNPRPPKEN*KHTPTFYP 595
           +P +    +P+P  EN  HTPT YP
Sbjct: 92  KPTEDVGTSPQPSTENETHTPTTYP 116


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 171 GILDFFFYKTKKNNDALNAVLLMKRYRPSV 260
           G++DFF  KTK+  D LN V L  R R  V
Sbjct: 729 GVVDFFLKKTKE--DHLNVVFLTPRTRAMV 756


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,644,115
Number of Sequences: 59808
Number of extensions: 343384
Number of successful extensions: 581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)