Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30410
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70846-2|ABI18146.1|  647|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U70846-1|AAB09104.4|  510|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U40937-1|AAA81693.1|  396|Caenorhabditis elegans Collagen protei...    29   2.3  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U39674-5|AAA80415.2|  229|Caenorhabditis elegans Ubiquitin conju...    28   5.2  
Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U70846-2|ABI18146.1|  647|Caenorhabditis elegans Hypothetical
           protein D1073.1b protein.
          Length = 647

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = -2

Query: 594 LILT*YNISNSSRPTSKCQANESETSNVALQRGDKISGLNLVYRVNR 454
           L++T Y I N S   +K Q+N SET+ V  ++ D I   +LV R+ +
Sbjct: 76  LVVTGYPIDNISMAITKMQSNYSETNFVGREK-DAIFFSSLVVRMEK 121


>U70846-1|AAB09104.4|  510|Caenorhabditis elegans Hypothetical
           protein D1073.1a protein.
          Length = 510

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = -2

Query: 594 LILT*YNISNSSRPTSKCQANESETSNVALQRGDKISGLNLVYRVNR 454
           L++T Y I N S   +K Q+N SET+ V  ++ D I   +LV R+ +
Sbjct: 76  LVVTGYPIDNISMAITKMQSNYSETNFVGREK-DAIFFSSLVVRMEK 121


>U40937-1|AAA81693.1|  396|Caenorhabditis elegans Collagen protein
           164 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 340 SNALWFPLISNRPHETVCHKNYKE 411
           SN LW  L++N  H  V  + YKE
Sbjct: 56  SNVLWKELVTNESHRRVARQTYKE 79


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 615 HTPTFYPLILT*YNISNSSRPTSKCQANESETSNV 511
           H PT YP ++T Y +    R  S    N++   NV
Sbjct: 359 HPPTLYPEVVTRYKLMERGRQLSSEFVNKTNVENV 393


>U39674-5|AAA80415.2|  229|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein21 protein.
          Length = 229

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +1

Query: 79  SKQQHSVAAKQFSNNIFTGYNNEYGVFEWIAEYWTFSFTKQKK 207
           S  Q +V AKQF NN        Y +F   A YWT  F   KK
Sbjct: 152 SDPQDAVVAKQFINN--------YPMFTATAVYWTSYFANSKK 186


>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 213 HCFFLFCK-RKSPIFRYPFENTIFIIISCKYIITELF 106
           +CFF      K   F  PF   + III C ++IT++F
Sbjct: 85  NCFFAVALIYKKSFFVVPFLIVMVIIIFCLHVITQIF 121


>AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical
           protein ZK105.3 protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 301 TDTIETNN-NKI--NISNALWFPLISNRPHETVCHKNYKEQFFWQLAVNTNSLTAIHS 465
           TD  ET   N I  +IS+  + P + +  + ++    Y+ QFF ++AVN    +  HS
Sbjct: 660 TDNAETQMLNPIGKSISDFYYIPTLQSEYYASLMRLFYENQFFLEIAVNRFLRSVDHS 717


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,468,078
Number of Sequences: 27780
Number of extensions: 269716
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)