Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30410
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.86 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 289 RLKWTDTIETNNNKINISNALWF 357
           R K  +T  T  + +N+S+A+WF
Sbjct: 594 RFKLANTDGTEEDALNLSSAVWF 616


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 106 KQFSNNIFTGYNNEY 150
           KQ S+NI+   NNEY
Sbjct: 358 KQISSNIYERQNNEY 372


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 113 NCFAATECCCFD 78
           +CFA   CC FD
Sbjct: 742 HCFALCHCCDFD 753


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 292 LKWTDTIETNNNKINISNALWFPLISNRP 378
           + W   +  +    N++N LW P I   P
Sbjct: 54  INWRSYVVCDVAYNNVNNWLWTPFIERGP 82


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 182 VQYSAIHSKTPYSLLY 135
           +  +AIH   PYS LY
Sbjct: 591 INQAAIHYNLPYSSLY 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,421
Number of Sequences: 438
Number of extensions: 3386
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)