Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30410
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17330.1 68416.m02215 expressed protein contains Pfam profile...    30   1.2  
At1g17270.1 68414.m02103 expressed protein                             30   1.2  
At5g50420.1 68418.m06244 expressed protein strong similarity to ...    29   3.7  
At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein ...    27   8.5  

>At3g17330.1 68416.m02215 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 595

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 636 PPKEN*KHTPTFYPLILT*YNISNSSRPTSKCQANESETSNVALQRGDKISGL 478
           PP E+   +PT+ P ++    +SNSS  +      +S+      + G  I+GL
Sbjct: 83  PPYESAASSPTYVPYVIQPDMVSNSSTDSLVANGGQSDGRGSMQRNGSAIAGL 135


>At1g17270.1 68414.m02103 expressed protein
          Length = 564

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 240 SLVGLHLTHHCFFLFCKRKSPIFRYP 163
           + + LHL  H F  FC  KSP   YP
Sbjct: 408 NFISLHLRRHGFLKFCNAKSPSCFYP 433


>At5g50420.1 68418.m06244 expressed protein strong similarity to
           unknown protein (gb|AAD50008.1)
          Length = 566

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 240 SLVGLHLTHHCFFLFCKRKSPIFRYP 163
           + + LH   H F  FC  KSP   YP
Sbjct: 410 NFIALHFRRHGFLKFCNAKSPSCFYP 435


>At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 300

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 467 YTKFKPEILSPRCKATLEVSDSFA*HLL 550
           YTK+ P    PRC    + S  FA H+L
Sbjct: 237 YTKYGP-YTCPRCNGVFDTSQKFAAHML 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,430,541
Number of Sequences: 28952
Number of extensions: 241162
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)