Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30409
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103 31 1.00
05_04_0234 + 19282196-19282818,19282948-19283347 29 4.0
02_04_0207 + 20933319-20933427,20933503-20933701,20933785-209339... 29 4.0
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 29 5.3
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601... 29 5.3
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143... 29 5.3
04_04_1463 + 33787799-33787973,33788669-33789096 29 5.3
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979... 29 5.3
11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600 28 7.0
08_01_0694 - 6136025-6136749,6137425-6137971 28 7.0
04_01_0377 - 4970034-4970687 28 7.0
02_01_0733 - 5477110-5477421,5478146-5478166 28 7.0
07_03_1570 + 27797315-27797409,27797519-27797551,27798135-277981... 28 9.3
04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587 28 9.3
>08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103
Length = 196
Score = 31.1 bits (67), Expect = 1.00
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 381 CGDSTCIERGLFCNGEKDCGD-GSDENSCDIDND 479
CGD+ C G+FC G D S+++S D+ +D
Sbjct: 157 CGDTGCFADGIFCPGNGDSDPAASNDSSVDMHSD 190
>05_04_0234 + 19282196-19282818,19282948-19283347
Length = 340
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Frame = +3
Query: 363 QDGFLACGDSTCIERGLFCNGEKD-CGDGSDENSCDIDNDPNRAPPCDSSSV 515
Q G C + C R +C D CGDG P PP S V
Sbjct: 38 QAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSGCGPTPTPTPPSPSDGV 89
>02_04_0207 +
20933319-20933427,20933503-20933701,20933785-20933931,
20934683-20934764,20935542-20935697,20935948-20936121,
20936278-20936349,20937012-20937083,20937322-20937440,
20937540-20937625,20937747-20937799,20938076-20938153
Length = 448
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 539 EDGTVIPGDLPARDVPQMITITFDDA 616
EDG + GD R VP ++T FDDA
Sbjct: 48 EDGQLGHGDAEDRPVPTVLTAAFDDA 73
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 402 ERGLFCNGEKDCGDGSDENSCDIDNDPNRAP-PCDSSSV 515
++ L C+G++D D S+ +C+ D N P C SSV
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTVPVTCSVSSV 1040
>06_03_0345 +
19758188-19758382,19759857-19759952,19760061-19760144,
19760504-19760573,19760934-19761838,19763661-19764287
Length = 658
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 309 KNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 482
+ +ER+ L E +G ++C ST G+K+ DG D+ D +P
Sbjct: 441 RGEERRGVDKLRCHEEFVTEGHISCSVSTDDSDSSTSKGDKNAKDGKDKGDKDKSEEP 498
>06_01_0185 -
1437693-1437834,1437969-1438078,1438214-1438264,
1438877-1439122,1439244-1439315,1439614-1439648,
1439755-1439845,1440546-1440610,1440733-1440813,
1441020-1441137,1441535-1441627,1441865-1441997,
1442471-1442503,1443264-1443343,1443444-1443549,
1443621-1443795,1443884-1443980,1444819-1445251,
1445329-1445459,1446052-1446341,1446429-1447002
Length = 1051
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 435 CGD--GSDENSCDIDNDPNRAPPCDSSSVSFLTASAPRTAQ 551
CG G E+S D D +A CD++ V+ +++SAPRTA+
Sbjct: 378 CGQEPGEPESSPDGDALGEKAH-CDATVVALVSSSAPRTAE 417
>04_04_1463 + 33787799-33787973,33788669-33789096
Length = 200
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -3
Query: 585 GTSLAGKSPGITVPSSEQKQSGRTHWRNRMAELYLGRCQYHK 460
G + ++PG ++ GR +WR R G+C Y +
Sbjct: 143 GRRVGARAPGDDGGGDVHRRDGRENWRRRWISRSEGKCDYFR 184
>04_03_0809 +
19896801-19897170,19897265-19897513,19897850-19897900,
19898007-19898267,19898427-19898479,19898746-19898887,
19898972-19899226,19899616-19900640
Length = 801
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -1
Query: 464 TRIFIRSIATVLFAVTEKTAFNASRVAASEEAILTEWFFSVQERLYFTLLVLELTIFHSI 285
T++ + S+A +LF + F +V + I++ WF + + L+V E+TI +
Sbjct: 224 TQVVLISVA-ILFMLFSVQRFGTDKVGYTFAPIISVWFLLIAGIGLYNLVVHEITILKAF 282
Query: 284 FP 279
P
Sbjct: 283 NP 284
>11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600
Length = 447
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = -2
Query: 421 LQKRPRSMQVESPQARKPS*QSGSSVYKRGFILRSLFLSLQFFTASFQSQVCFSISRTNR 242
L + ++ +P +RK S + +++YKR + RSL L + + F V + R+++
Sbjct: 325 LDRLELDLRHNAPCSRKRSAVAMANLYKRDYSSRSLLLQFR-YKLDFDKSVDLFVHRSSK 383
Query: 241 P 239
P
Sbjct: 384 P 384
>08_01_0694 - 6136025-6136749,6137425-6137971
Length = 423
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 533 RSSQEGHTGGIAWRSSIWVVVNITRIFIRSIATVLFAVT 417
++ ++G G AWRS++W +V + IA +++A+T
Sbjct: 247 KAEEDGGMSGSAWRSTLWSIVGRVKWHGIGIA-LIYAIT 284
>04_01_0377 - 4970034-4970687
Length = 217
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +3
Query: 363 QDGFLACGDSTCIERGLFCN-GEKDCGDGSDENSCDIDNDPNRAPPCDSSSVSF 521
Q G C ++ C G +C G CG G C D A ++ SVSF
Sbjct: 153 QAGGDKCPNNFCCSAGGYCGLGGNYCGSGCQSGGCYKGGDGMAAILANNQSVSF 206
>02_01_0733 - 5477110-5477421,5478146-5478166
Length = 110
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 279 WKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFC--NGEKDCGDGSD 452
W +K+ K + R+ L Y C D LA GD TC R L +G D DG
Sbjct: 34 WTVRLKHTKGRRPRRERAVLRYGWHRFCADNGLAVGD-TCFFRALRSAGSGAGDVDDGDG 92
Query: 453 EN 458
++
Sbjct: 93 DH 94
>07_03_1570 +
27797315-27797409,27797519-27797551,27798135-27798199,
27798406-27798493,27798579-27798651,27798975-27799081,
27799595-27799637,27799760-27799816,27799905-27799981,
27800221-27800266,27800364-27800410,27800498-27800571,
27800656-27800711,27800885-27801011,27801133-27801206
Length = 353
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 423 GEKDCGDGSDENSCDIDNDPNRAPPCDSSSVS 518
GE+D D SD++ D+D DPN + S+ S
Sbjct: 307 GEQD-SDDSDDDGMDVDMDPNSSKGSRSTKTS 337
>04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587
Length = 230
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 71 DGGDKLTRRQRKMKAWNKNY-ARTRTPANGSGW---WPARATTVATSSSVLP 214
D G T+R RK +AW ++ A P G W + + + ++ S+ LP
Sbjct: 60 DDGSYRTKRSRKYEAWRVDFDAGILVPVKGFNWRALFISMSRAISVSAETLP 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,996,046
Number of Sequences: 37544
Number of extensions: 478047
Number of successful extensions: 1636
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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