Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30407
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   1.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   1.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   1.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.8  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -3

Query: 400 TRHYLTVVN*EGYREYILSMVLESS 326
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 10  SKYYVTIIDAPGHRDFIKNMITGTS 34


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -3

Query: 400 TRHYLTVVN*EGYREYILSMVLESS 326
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 26  SKYYVTIIDAPGHRDFIKNMITGTS 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -3

Query: 400 TRHYLTVVN*EGYREYILSMVLESS 326
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 83  SKYYVTIIDAPGHRDFIKNMITGTS 107


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = -3

Query: 397 RHYLTVVN*EGYREYILSMVLESS 326
           ++Y+T+++  G+R++I +M+  +S
Sbjct: 84  KYYVTIIDAPGHRDFIKNMITGTS 107


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 517 PIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTV 630
           P  +S  W +    W L  CKL+      S Y++ +T+
Sbjct: 88  PFELSVFWQQYPWQWGLGICKLRAYVSETSSYVSVLTI 125


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 745  LCFSPNDTGYVLLS 786
            +C+SPND  +VL S
Sbjct: 1070 VCYSPNDEDFVLHS 1083


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 123 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVLSSDVITHFPVLGTRLC 293
           I+SS  +KT+     +K   + NNY    K+LY + ++I  + +   V  ++     R  
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPI--PVPVYYGNFPPRPM 138

Query: 294 VCGISLQARLP 326
              IS+Q ++P
Sbjct: 139 GPWISMQEQIP 149


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 123 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVLSSDVITHFPVLGTRLC 293
           I+SS  +KT+     +K   + NNY    K+LY + ++I  + +   V  ++     R  
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPI--PVPVYYGNFPPRPM 138

Query: 294 VCGISLQARLP 326
              IS+Q ++P
Sbjct: 139 GPWISMQEQIP 149


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 123 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVLSSDVITHFPVLGTRLC 293
           I+SS  +KT+     +K   + NNY    K+LY + ++I  + +   V  ++     R  
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPI--PVPVYYGNFPPRPM 138

Query: 294 VCGISLQARLP 326
              IS+Q ++P
Sbjct: 139 GPWISMQEQIP 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,979
Number of Sequences: 438
Number of extensions: 5785
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)