Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30406
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.0  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   5.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.3  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    21   9.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 208 LNNF*LKSCLSRPEFKSNMAAAVVSGKDIEKPQAE 312
           LNN   K   S  +F +N  A +V+    EKP+++
Sbjct: 412 LNNLLDKKPYSTYKFPTNFDALIVNEMRSEKPESK 446


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 208 LNNF*LKSCLSRPEFKSNMAAAVVSGKDIEKPQAE 312
           LNN   K   S  +F +N  A +V+    EKP+++
Sbjct: 304 LNNLLDKKPYSTYKFPTNFDALIVNEMRSEKPESK 338


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 415 LRVKGPVRMPT 447
           +RVK P+RMPT
Sbjct: 1   MRVKHPLRMPT 11


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 415 LRVKGPVRMPT 447
           +RVK P+RMPT
Sbjct: 1   MRVKHPLRMPT 11


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/20 (25%), Positives = 15/20 (75%)
 Frame = +1

Query: 286 KDIEKPQAEVSPIHRIRITL 345
           +++EK + ++S +H+  +T+
Sbjct: 92  REVEKAKRDLSSVHKTTLTI 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,660
Number of Sequences: 336
Number of extensions: 2979
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)