Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30406
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   116   3e-27
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   1.4  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    28   1.4  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   1.9  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.7  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.6  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  116 bits (279), Expect = 3e-27
 Identities = 53/73 (72%), Positives = 64/73 (87%)
 Frame = +1

Query: 295 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 474
           +K Q   S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 475 TPCGEGSKTWDLF 513
           TP GEGSKTW+ +
Sbjct: 68  TPNGEGSKTWETY 80



 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 34/39 (87%), Positives = 39/39 (100%)
 Frame = +3

Query: 507 SFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 623
           +++MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIA
Sbjct: 79  TYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 277  VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 426
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -3

Query: 314  TSAWGFSMSLPDTTAAAMLLLNSGRDKQLFNQKLFSAEPEKVHCVLYVCNCNF 156
            T  +GFS        A          K +  Q+L     +K + +LY CNC F
Sbjct: 1302 TKYYGFSFFRHGNIVAYGKSRKVANAKYIMKQRLLKLLEDKSNLLLYSCNCKF 1354


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 268 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 366
           A V +  D+EKPQ +V+   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 516 MRIHKRVIDLHSPSEIVKQITSINIEPGV 602
           +R+H+R I L + S+ ++   + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 297 ETPGRGLPYSP 329
           ETPGR LP+SP
Sbjct: 166 ETPGRNLPFSP 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,681
Number of Sequences: 5004
Number of extensions: 47383
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)