Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30406
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514          111   5e-25
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294          110   9e-25
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923          107   8e-24
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504...    36   0.030
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348...    29   4.5  
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...    29   4.5  

>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
          Length = 130

 Score =  111 bits (267), Expect = 5e-25
 Identities = 49/83 (59%), Positives = 65/83 (78%)
 Frame = +1

Query: 265 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 444
           A   + G  +   +A    ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+P
Sbjct: 9   AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68

Query: 445 TKILRITTRKTPCGEGSKTWDLF 513
           TK+L ITTRK+PCGEG+ TWD F
Sbjct: 69  TKVLHITTRKSPCGEGTNTWDRF 91



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 31/39 (79%), Positives = 34/39 (87%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 626
           F+ RIHKRVIDL S  ++VKQITSI IEPGVEVEVTIAD
Sbjct: 91  FEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 129


>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
          Length = 127

 Score =  110 bits (265), Expect = 9e-25
 Identities = 53/88 (60%), Positives = 68/88 (77%), Gaps = 4/88 (4%)
 Frame = +1

Query: 262 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKG 429
           MAAA V     G  +   +A    ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKG
Sbjct: 1   MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60

Query: 430 PVRMPTKILRITTRKTPCGEGSKTWDLF 513
           PVR+PTK+L ITTRK+PCGEG+ TWD F
Sbjct: 61  PVRIPTKVLHITTRKSPCGEGTNTWDRF 88



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 31/39 (79%), Positives = 34/39 (87%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 626
           F+ RIHKRVIDL S  ++VKQITSI IEPGVEVEVTIAD
Sbjct: 88  FEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 126


>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
          Length = 128

 Score =  107 bits (257), Expect = 8e-24
 Identities = 51/83 (61%), Positives = 64/83 (77%)
 Frame = +1

Query: 265 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 444
           A  + SGK   +   EV   HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMP
Sbjct: 9   APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66

Query: 445 TKILRITTRKTPCGEGSKTWDLF 513
           TK+L ITTRK+PCGEG+ TWD F
Sbjct: 67  TKVLHITTRKSPCGEGTNTWDRF 89



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/39 (76%), Positives = 36/39 (92%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 626
           F+MR+HKRVIDL S +++VKQITSI IEPGVEVEVTI+D
Sbjct: 89  FEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127


>03_02_0020 -
           5045900-5046211,5046233-5046290,5046604-5047242,
           5048475-5048515,5048672-5048728,5048952-5049140
          Length = 431

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +1

Query: 313 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTK 450
           ++P  +IRI L S  V  +E  C  +I  AK    +  GPV +PTK
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTK 374



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVEVTI 620
           F++R H+R+ID+  P ++ +  +  + +  GV+VEV +
Sbjct: 394 FEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431


>06_02_0345 +
           14833838-14833997,14834095-14834552,14834633-14834870,
           14834974-14835431,14836554-14836955
          Length = 571

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +3

Query: 330 HQDHSYFSQCALTREGLC*PNQWSQETEAACKG--PSPH---ANQDPA 458
           H   S   +CAL R+G     +W  ET   C G  P+P     +QDPA
Sbjct: 11  HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58


>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 357 CALTREGLC*PNQWSQETEAACKGPSP 437
           C L  EGL   ++W++   A  +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,653,882
Number of Sequences: 37544
Number of extensions: 331291
Number of successful extensions: 828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)