Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30406
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   4e-19
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            30   1.5  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   2.0  
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      29   2.6  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_22476| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               28   7.9  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   7.9  
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 42/56 (75%), Positives = 48/56 (85%), Gaps = 2/56 (3%)
 Frame = +1

Query: 352 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDLF 513
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWD +
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRY 61



 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 36/40 (90%), Positives = 40/40 (100%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 629
           ++MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 61  YEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +3

Query: 321 YSPHQDHSYFSQCALTR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 470
           Y P   +SY + CA T+   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 351 SQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 470
           S C     GLC P  +   ++ +  GPSP +  DP+   P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 286 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 387
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -3

Query: 650 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHNFRGRV*VDHSLVDSHLKRSQV 498
           FY  L L V D    L  G+D    DLF   R    VD+SLV   +K +++
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMKFTEI 452


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 226  KSCLSRPEFKSNMAAAVVSGKDIEKP 303
            KSC   P    ++ AA VSG  +EKP
Sbjct: 1115 KSCAQLPRVMDHVGAACVSGTSMEKP 1140


>SB_22476| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 269

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +1

Query: 343 LTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILR--ITTRKTPCGEGSKTWDLFR 516
           L ++N  +  K+CA   N     KL  +  +    K  +  +TTRK PC + ++T     
Sbjct: 53  LCAQNTLTTRKLCAQ--NTLTTSKLCAQNTLTTRKKCAQNTLTTRK-PCAQNTQTMRTKH 109

Query: 517 CESTRE*STYT 549
            + TR   TYT
Sbjct: 110 ADYTRTMRTYT 120


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 426  GPSPHANQDPAYHHP 470
            GP PH+ Q P  HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203


>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 238 SRPEFKSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 375
           ++P    N A+ ++S   + +PQA + P+H   I + SRN  ++ K
Sbjct: 301 NQPAMTLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,162,834
Number of Sequences: 59808
Number of extensions: 388974
Number of successful extensions: 776
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)