Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30406
         (676 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20 pro...   124   4e-28
BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20 p...   124   4e-28
BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20 p...   124   4e-28
AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20 p...   124   4e-28
AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20 p...    66   8e-11

>L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  124 bits (298), Expect = 4e-28
 Identities = 60/78 (76%), Positives = 65/78 (83%), Gaps = 1/78 (1%)
 Frame = +1

Query: 286 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 462
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 463 TTRKTPCGEGSKTWDLFR 516
           TTRKTPCGEGSKTWD F+
Sbjct: 64  TTRKTPCGEGSKTWDRFQ 81



 Score = 80.2 bits (189), Expect = 6e-15
 Identities = 38/40 (95%), Positives = 40/40 (100%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 629
           FQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 80  FQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  124 bits (298), Expect = 4e-28
 Identities = 60/78 (76%), Positives = 65/78 (83%), Gaps = 1/78 (1%)
 Frame = +1

Query: 286 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 462
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 463 TTRKTPCGEGSKTWDLFR 516
           TTRKTPCGEGSKTWD F+
Sbjct: 64  TTRKTPCGEGSKTWDRFQ 81



 Score = 80.2 bits (189), Expect = 6e-15
 Identities = 38/40 (95%), Positives = 40/40 (100%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 629
           FQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 80  FQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  124 bits (298), Expect = 4e-28
 Identities = 60/78 (76%), Positives = 65/78 (83%), Gaps = 1/78 (1%)
 Frame = +1

Query: 286 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 462
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 463 TTRKTPCGEGSKTWDLFR 516
           TTRKTPCGEGSKTWD F+
Sbjct: 64  TTRKTPCGEGSKTWDRFQ 81



 Score = 80.2 bits (189), Expect = 6e-15
 Identities = 38/40 (95%), Positives = 40/40 (100%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 629
           FQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 80  FQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  124 bits (298), Expect = 4e-28
 Identities = 60/78 (76%), Positives = 65/78 (83%), Gaps = 1/78 (1%)
 Frame = +1

Query: 286 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 462
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 463 TTRKTPCGEGSKTWDLFR 516
           TTRKTPCGEGSKTWD F+
Sbjct: 64  TTRKTPCGEGSKTWDRFQ 81



 Score = 80.2 bits (189), Expect = 6e-15
 Identities = 38/40 (95%), Positives = 40/40 (100%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 629
           FQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 80  FQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20
           protein.
          Length = 60

 Score = 66.5 bits (155), Expect = 8e-11
 Identities = 28/31 (90%), Positives = 29/31 (93%)
 Frame = +1

Query: 424 KGPVRMPTKILRITTRKTPCGEGSKTWDLFR 516
           KGPVRMPTK LRITTRKTPCGEGSKTWD F+
Sbjct: 1   KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQ 31



 Score = 63.7 bits (148), Expect = 6e-10
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGV 602
           FQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 30  FQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,750,674
Number of Sequences: 237096
Number of extensions: 1912807
Number of successful extensions: 3800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3799
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)