Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30406
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y11119-1|CAA72004.1|  120|Drosophila melanogaster S20 ribosomal ...   133   2e-31
AY071742-1|AAL49364.1|  120|Drosophila melanogaster RH47995p pro...   133   2e-31
AE014297-2870|AAF55809.1|  120|Drosophila melanogaster CG15693-P...   133   2e-31
AY071353-1|AAL48975.1|  120|Drosophila melanogaster RE38972p pro...   128   7e-30
AY075183-1|AAL68053.1|  388|Drosophila melanogaster AT13019p pro...    29   5.8  
AE013599-3908|AAF47233.2|  388|Drosophila melanogaster CG4681-PA...    29   5.8  

>Y11119-1|CAA72004.1|  120|Drosophila melanogaster S20 ribosomal
           protein protein.
          Length = 120

 Score =  133 bits (321), Expect = 2e-31
 Identities = 63/78 (80%), Positives = 67/78 (85%), Gaps = 1/78 (1%)
 Frame = +1

Query: 286 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 462
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 463 TTRKTPCGEGSKTWDLFR 516
           TTRKTPCGEGSKTWD F+
Sbjct: 66  TTRKTPCGEGSKTWDRFQ 83



 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 36/39 (92%), Positives = 39/39 (100%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 626
           FQMRIHKR+IDLHSPSEIVK+ITSINIEPGVEVEVTIA+
Sbjct: 82  FQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120


>AY071742-1|AAL49364.1|  120|Drosophila melanogaster RH47995p
           protein.
          Length = 120

 Score =  133 bits (321), Expect = 2e-31
 Identities = 63/78 (80%), Positives = 67/78 (85%), Gaps = 1/78 (1%)
 Frame = +1

Query: 286 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 462
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 463 TTRKTPCGEGSKTWDLFR 516
           TTRKTPCGEGSKTWD F+
Sbjct: 66  TTRKTPCGEGSKTWDRFQ 83



 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 36/39 (92%), Positives = 39/39 (100%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 626
           FQMRIHKR+IDLHSPSEIVK+ITSINIEPGVEVEVTIA+
Sbjct: 82  FQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120


>AE014297-2870|AAF55809.1|  120|Drosophila melanogaster CG15693-PA
           protein.
          Length = 120

 Score =  133 bits (321), Expect = 2e-31
 Identities = 63/78 (80%), Positives = 67/78 (85%), Gaps = 1/78 (1%)
 Frame = +1

Query: 286 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 462
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 463 TTRKTPCGEGSKTWDLFR 516
           TTRKTPCGEGSKTWD F+
Sbjct: 66  TTRKTPCGEGSKTWDRFQ 83



 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 36/39 (92%), Positives = 39/39 (100%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 626
           FQMRIHKR+IDLHSPSEIVK+ITSINIEPGVEVEVTIA+
Sbjct: 82  FQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120


>AY071353-1|AAL48975.1|  120|Drosophila melanogaster RE38972p
           protein.
          Length = 120

 Score =  128 bits (309), Expect = 7e-30
 Identities = 61/78 (78%), Positives = 66/78 (84%), Gaps = 1/78 (1%)
 Frame = +1

Query: 286 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 462
           KDIEKP   + + +H IRITLTSRNVRSLE VC DLINGAK Q LRV+GPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHCIRITLTSRNVRSLENVCRDLINGAKNQNLRVEGPVRMPTKTLRI 65

Query: 463 TTRKTPCGEGSKTWDLFR 516
           TTRKTPCGEGSKTWD F+
Sbjct: 66  TTRKTPCGEGSKTWDRFQ 83



 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 36/39 (92%), Positives = 39/39 (100%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 626
           FQMRIHKR+IDLHSPSEIVK+ITSINIEPGVEVEVTIA+
Sbjct: 82  FQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120


>AY075183-1|AAL68053.1|  388|Drosophila melanogaster AT13019p
           protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +1

Query: 202 SALNNF*LKSCLSRPEFKSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVC 381
           S   N  L++ LSR +  ++ A   +  K + + Q +    HR  + L    +R+L++  
Sbjct: 284 SRQTNINLENRLSRVQEDADAARQEL--KLLREEQRDQLEAHRKELKLRDSRIRALKRQR 341

Query: 382 ADLINGAKKQ 411
            DL+N  KKQ
Sbjct: 342 GDLLNAYKKQ 351


>AE013599-3908|AAF47233.2|  388|Drosophila melanogaster CG4681-PA
           protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +1

Query: 202 SALNNF*LKSCLSRPEFKSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVC 381
           S   N  L++ LSR +  ++ A   +  K + + Q +    HR  + L    +R+L++  
Sbjct: 284 SRQTNINLENRLSRVQEDADAARQEL--KLLREEQRDQLEAHRKELKLRDSRIRALKRQR 341

Query: 382 ADLINGAKKQ 411
            DL+N  KKQ
Sbjct: 342 GDLLNAYKKQ 351


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,806,864
Number of Sequences: 53049
Number of extensions: 565559
Number of successful extensions: 1380
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)