Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30406
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ...   113   8e-26
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ...   113   8e-26
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo...   111   3e-25
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ...   111   3e-25
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,...    42   3e-04

>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  113 bits (273), Expect = 8e-26
 Identities = 48/70 (68%), Positives = 61/70 (87%)
 Frame = +1

Query: 304 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 483
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 484 GEGSKTWDLF 513
           GEG+ TWD F
Sbjct: 74  GEGTNTWDRF 83



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 629
           F++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 83  FELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  113 bits (273), Expect = 8e-26
 Identities = 48/70 (68%), Positives = 61/70 (87%)
 Frame = +1

Query: 304 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 483
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 484 GEGSKTWDLF 513
           GEG+ TWD F
Sbjct: 74  GEGTNTWDRF 83



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 629
           F++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 83  FELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
           ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
          Length = 124

 Score =  111 bits (268), Expect = 3e-25
 Identities = 47/64 (73%), Positives = 58/64 (90%)
 Frame = +1

Query: 322 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 501
           IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22  IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81

Query: 502 WDLF 513
           WD F
Sbjct: 82  WDRF 85



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 629
           F++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 85  FELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
           ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
          Length = 124

 Score =  111 bits (268), Expect = 3e-25
 Identities = 47/64 (73%), Positives = 58/64 (90%)
 Frame = +1

Query: 322 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 501
           IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22  IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81

Query: 502 WDLF 513
           WD F
Sbjct: 82  WDRF 85



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 510 FQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 629
           F++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 85  FELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
           putative similar to 30S ribosomal protein S10 GB:P02364
           [Escherichia coli] (est matches suggest the N-terminal
           extension)
          Length = 191

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = +1

Query: 244 PEFKSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRV 423
           PE     A+ V S   I     +++P  +IRI L S  V  +E  C  +++ A+    + 
Sbjct: 66  PEILDEPASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKT 125

Query: 424 KGPVRMPTKILRITTRKTP 480
            GPV +PTK       K+P
Sbjct: 126 MGPVPLPTKKRIYCVLKSP 144



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 510 FQMRIHKRVID-LHSPSEIVKQITSINIEPGVEVEVTI 620
           F++R H+R+ID L+  ++ +  +  +++  GV+VEV +
Sbjct: 154 FEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,138
Number of Sequences: 28952
Number of extensions: 258155
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)