Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30405
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    25   1.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   4.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   7.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   7.3  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 291 HNNNNFESFERKL 253
           HNNNN++++ +KL
Sbjct: 324 HNNNNYKNYNKKL 336


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 294 DHNNNNFESFERKLCHIKN 238
           ++NNNN+ ++ +KL + KN
Sbjct: 332 NYNNNNYNNYNKKL-YYKN 349


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 115 LDNLRETKILFACTSTEI*VEILDTHLC 198
           +DNLR+ K L AC +  +   ++ T  C
Sbjct: 372 IDNLRKAKYLRACITESL--RLIPTTTC 397


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 291 HNNNNFESFERK 256
           HNNNN+ ++  K
Sbjct: 313 HNNNNYNNYNNK 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,933
Number of Sequences: 438
Number of extensions: 4192
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)