Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30404X
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0119 + 25742277-25742434,25742976-25743061,25743146-257432...    67   1e-11
01_06_0671 - 31076463-31076610,31077060-31077202,31077758-310779...    46   2e-05
03_04_0006 + 16257288-16259522                                         31   0.92 
03_04_0031 - 16642947-16643864                                         27   8.5  

>05_06_0119 +
           25742277-25742434,25742976-25743061,25743146-25743223,
           25743919-25744031,25744094-25744171,25744941-25744949,
           25744981-25745082,25745165-25745714,25745941-25746146,
           25746868-25747031,25747157-25747310
          Length = 565

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +1

Query: 310 MSSHGVHSNYTNPGGNVHGVVTVTXXXXXXXXXX-SADYSWFPGYSWTVALCRDCRAHVG 486
           MS+ G    Y NP G VH  +TV+           S  +SWFPGYSWT+A C DC +++G
Sbjct: 472 MSTDGPLGAYVNPHGFVHETITVSRATGLALDGNPSTVHSWFPGYSWTIASCTDCESNIG 531

Query: 487 WRFDAIK 507
           W F A K
Sbjct: 532 WLFKATK 538


>01_06_0671 -
           31076463-31076610,31077060-31077202,31077758-31077963,
           31078119-31078644,31078753-31078854,31079572-31079637,
           31079710-31079822,31080260-31080345,31081007-31081146
          Length = 509

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +1

Query: 412 SADYSWFPGYSWTVALCRDCRAHVGWRFDAIK 507
           S  +S FPGY+WT+ALC  C +++GW F A K
Sbjct: 453 SKAHSLFPGYTWTIALCAACESNIGWLFRAEK 484


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 340 CSWSARRGWTWGTRARVRHLPAAGPA 263
           CSWS R G  W   +  R  PAA PA
Sbjct: 555 CSWSPREGSDWIVFSSTRDKPAAAPA 580


>03_04_0031 - 16642947-16643864
          Length = 305

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +3

Query: 117 SLSYWVASNLTLGARDRLALFAVDDALLRLHLEVRIITQFSRAQKCRCAAGPAAG 281
           SLS+ VA  +     ++ AL  +DDA  RL  E R + + SR      A   A G
Sbjct: 243 SLSFAVAREVVEDREEQQALLRLDDAAARLAREGRYLERRSRYLAAIAAIKDALG 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,429,546
Number of Sequences: 37544
Number of extensions: 161047
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)