Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30404X
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)                 31   0.53 
SB_52610| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_20925| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
          Length = 206

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 180 AVDDALLRLHLEVRIITQFSRAQKCRCAAGPAAGRWRTRARVPHVQPR 323
           A++DALL + ++   +    RA KC  A G A+   R   +V  + P+
Sbjct: 87  ALEDALLSIEIDNNFVKGHYRAAKCHLAMGSASNALREIRKVLELDPK 134


>SB_52610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 310 MSSHGVHSNYTNPGGNVHGVVT-VTXXXXXXXXXXSADYSWFPG 438
           MS  G    Y NPGG VH  +T             +A+ SWFPG
Sbjct: 1   MSLDGPLGAYVNPGGFVHETLTFYKALGIRLRGHPTAENSWFPG 44


>SB_20925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 310 MSSHGVHSNYTNPGGNVHGVVT-VTXXXXXXXXXXSADYSWFPG 438
           MS  G    Y NPGG VH  +T             +A+ SWFPG
Sbjct: 28  MSLDGPLGAYVNPGGFVHETLTFYKALGIRLRGHPTAENSWFPG 71


>SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 346 GWCSWSARRGWTWGTRARVRHLPAAGPAAQRH 251
           GW +W +++ W W +     H    G   Q+H
Sbjct: 141 GWTNWPSKQAWNWNSVENGPHRDIVG-VLQKH 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,112,432
Number of Sequences: 59808
Number of extensions: 157937
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)