Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30404X
         (594 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC067811-1|AAH67811.1|  441|Homo sapiens cereblon protein.             69   9e-12
BC017419-1|AAH17419.1|  442|Homo sapiens cereblon protein.             69   9e-12
AK027507-1|BAB55162.1|  442|Homo sapiens protein ( Homo sapiens ...    69   9e-12
AF111169-4|AAD44364.1|  608|Homo sapiens unknown protein.              30   5.4  

>BC067811-1|AAH67811.1|  441|Homo sapiens cereblon protein.
          Length = 441

 Score = 69.3 bits (162), Expect = 9e-12
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +1

Query: 301 VFPMSSHGVHSNYTNPGGNVHGVVTV-TXXXXXXXXXXSADYSWFPGYSWTVALCRDCRA 477
           +F +S  G  + Y NP G VH  +TV            S ++SWFPGY+WTVA C+ C +
Sbjct: 336 IFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICAS 395

Query: 478 HVGWRFDAIK 507
           H+GW+F A K
Sbjct: 396 HIGWKFTATK 405


>BC017419-1|AAH17419.1|  442|Homo sapiens cereblon protein.
          Length = 442

 Score = 69.3 bits (162), Expect = 9e-12
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +1

Query: 301 VFPMSSHGVHSNYTNPGGNVHGVVTV-TXXXXXXXXXXSADYSWFPGYSWTVALCRDCRA 477
           +F +S  G  + Y NP G VH  +TV            S ++SWFPGY+WTVA C+ C +
Sbjct: 337 IFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICAS 396

Query: 478 HVGWRFDAIK 507
           H+GW+F A K
Sbjct: 397 HIGWKFTATK 406


>AK027507-1|BAB55162.1|  442|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14601 fis, clone NT2RP1000124. ).
          Length = 442

 Score = 69.3 bits (162), Expect = 9e-12
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +1

Query: 301 VFPMSSHGVHSNYTNPGGNVHGVVTV-TXXXXXXXXXXSADYSWFPGYSWTVALCRDCRA 477
           +F +S  G  + Y NP G VH  +TV            S ++SWFPGY+WTVA C+ C +
Sbjct: 337 IFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICAS 396

Query: 478 HVGWRFDAIK 507
           H+GW+F A K
Sbjct: 397 HIGWKFTATK 406


>AF111169-4|AAD44364.1|  608|Homo sapiens unknown protein.
          Length = 608

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 261 AAGPAAGRWRTRARVPHVQPRR 326
           AAGP AG    R+R PH QPRR
Sbjct: 511 AAGPDAGDASGRSRSPHSQPRR 532


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,497,579
Number of Sequences: 237096
Number of extensions: 778129
Number of successful extensions: 2213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2213
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)