Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30404X
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68008-1|CAA92002.1|  154|Caenorhabditis elegans Hypothetical pr...    51   7e-07
Z68507-4|CAA92828.2|  414|Caenorhabditis elegans Hypothetical pr...    42   4e-04
U00033-1|AAC48292.3|  731|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z68008-1|CAA92002.1|  154|Caenorhabditis elegans Hypothetical
           protein R08B4.3 protein.
          Length = 154

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 295 EHVFPMSSHGVHSNY-TNPGGNVHGVVTVTXXXXXXXXXXSADYSWFPGYSWTVALCRDC 471
           E+ FP++      N  TNP      V               +  +W+PGY WT+ LC+ C
Sbjct: 50  EYDFPLAGKTTKVNVLTNPENQKFHVFGAKTAHLHFHGTPQSHATWYPGYKWTICLCKSC 109

Query: 472 RAHVGWRFDAIK 507
             H+GW F+  K
Sbjct: 110 SRHMGWYFEPEK 121


>Z68507-4|CAA92828.2|  414|Caenorhabditis elegans Hypothetical
           protein M18.6 protein.
          Length = 414

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 295 EHVFPMSSHGVHSNYTNPGGNVHGVVTVTXXXXXXXXXX-SADYSWFPGYSWTVALCRDC 471
           EH+  +    +   + N  G VH +  ++           S +++WFP Y+W +  C  C
Sbjct: 289 EHIMRLPDQTM--THVNAHGFVHKITLLSEIRNYDRATPPSYEFTWFPEYAWIIIQCSRC 346

Query: 472 RAHVGWRF 495
             H+GW +
Sbjct: 347 HEHLGWEY 354


>U00033-1|AAC48292.3|  731|Caenorhabditis elegans Hypothetical
           protein F37C12.7 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 455 RCAETAARTWA-GGSTP*REPPPAAVL 532
           RC++ A R W+ GG +P  +PP   +L
Sbjct: 511 RCSDIALREWSEGGYSPFNDPPQGEIL 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,382,064
Number of Sequences: 27780
Number of extensions: 105458
Number of successful extensions: 298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)