Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30404X
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25740.1 68415.m03089 ATP-dependent protease La (LON) domain-...    55   3e-08
At5g14960.1 68418.m01755 transcription factor, putative / E2F-li...    27   7.1  

>At2g25740.1 68415.m03089 ATP-dependent protease La (LON)
           domain-containing protein low similarity to protease Lon
           [Pseudomonas fluorescens] GI:7644385; contains Pfam
           profile PF02190: ATP-dependent protease La (LON) domain
          Length = 547

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 310 MSSHGVHSNYTNPGGNVHGVVTVTXXXXXXXXXXSADY-SWFPGYSWTVALCRDCRAHVG 486
           MS+ G    Y NP G VH ++T                 SWFPGY+WT+A C  C   +G
Sbjct: 460 MSNEGPLGAYVNPHGYVHEIMTFYKANDIALRGRPVKKDSWFPGYAWTIANCATCETQLG 519

Query: 487 WRFDA 501
           W F A
Sbjct: 520 WHFTA 524


>At5g14960.1 68418.m01755 transcription factor, putative / E2F-like
           repressor E2L1 (E2L1) identical to E2F-like repressor
           E2L1 GI:20502504 from [Arabidopsis thaliana]
          Length = 359

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +3

Query: 117 SLSYWVASNLTLGARDRLALFAVDDALLRLHLEVRII 227
           SL   VA+ LTL  R  + LF +DDA  +L +E R I
Sbjct: 17  SLGVLVANFLTLYNRPDVDLFGLDDAAAKLGVERRRI 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,079,406
Number of Sequences: 28952
Number of extensions: 101111
Number of successful extensions: 282
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)