Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30402
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 54 8e-08
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 37 0.017
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 36 0.031
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.040
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 35 0.071
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.22
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 33 0.28
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 31 0.87
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.87
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 30 2.0
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 30 2.0
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 30 2.0
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 29 2.7
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 29 3.5
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 29 4.6
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 29 4.6
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 6.1
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 54.8 bits (126), Expect = 6e-08
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA 253
+RVY+G + + K ++EREF+ +G L VWVA NPPGFA
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFA 41
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 241 PRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
P F F FE+ ++AEDA ++G + G +VE+++
Sbjct: 38 PGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAK 74
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 54.4 bits (125), Expect = 8e-08
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA 253
T++YVG L +LER F+K+G+L+ VWVA NPPGFA
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFA 43
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA 253
T+VY+G L + K ++E EF YG L VWVA NPPGFA
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFA 71
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+ F+EFE+ ++A+DA NG EMLG + VE SR
Sbjct: 38 YGFVEFEDDRDADDAVYECNGKEMLGERILVEHSR 72
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
RVY+G L G ++D+ R F YG+L +
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDI 32
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 35.9 bits (79), Expect = 0.031
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 241 PRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
P F F+EFE+ ++AEDA +G E G ++VE R
Sbjct: 300 PPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVEFPR 336
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 122 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
+S RVYVG L + ++++DL F KYG + V
Sbjct: 257 NSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADV 290
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 35.5 bits (78), Expect = 0.040
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVE 342
+ +E+E +EA+ A A+NG EMLG + V+
Sbjct: 336 YALVEYETFKEAQSALEALNGAEMLGQNISVD 367
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 34.7 bits (76), Expect = 0.071
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+ F+EF++ ++AEDA +NG +++G + VE S+
Sbjct: 724 YGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSK 758
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
TR++VGGL I +LEREFD++G + +
Sbjct: 318 TRLWVGGLGPWISIPELEREFDRFGAIRRI 347
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKV 339
+S F F+ F N ++A+ A ++NG E+ G TLK+
Sbjct: 97 RSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATL 333
KS F F+ FE +EAE+A + +NG E+ G L
Sbjct: 147 KSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSV 223
++VG L E I++ED+ + F +YG++ SV
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESV 35
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSV 223
++VGG+ + ++ +ER F +YG++ V
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKV 357
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 119 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 214
M+S GT+++VG L + K DLE F YGKL
Sbjct: 1 MASRGTQLFVGRLSKETKLRDLENVFYLYGKL 32
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
F F+ ++N+ A++A MNG ++ LKV++ R
Sbjct: 305 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKR 339
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
F F+ ++N+ A++A MNG ++ LKV++ R
Sbjct: 320 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKR 354
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKV 339
K + FIE+EN Q A DA ++MN ++ G L+V
Sbjct: 238 KHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRV 272
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+ F+ ++N +A A MNG + TLKV +R
Sbjct: 70 YAFVNYDNPDDANKAVREMNGARLQNKTLKVSFAR 104
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSV 223
V+VG L +KK+ L++ F KYG++ SV
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFA 253
+++VGGL KE L+ F KYG+L V + ++ P GFA
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFA 73
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 229 STKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKV 339
+ +S + F++F + A+ A MNG E+ G LK+
Sbjct: 279 TNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
T +YVGGL + ++DL F ++G+L S+
Sbjct: 304 TTLYVGGLEGKVTEQDLRDHFYQFGELRSI 333
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 122 SSGGTRVYVGGLVEGIKKEDLEREFDKYG 208
S+ +V++GGL G +EDL+ F YG
Sbjct: 198 SANDGKVFIGGLAFGTTEEDLKEYFSTYG 226
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
VYVG + + K+D+ R F KYG + V V G
Sbjct: 372 VYVGKISDETHKDDVWRRFRKYGPIEKVTVHFRDNG 407
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 229
VYVG L + DL + F++YGK+ V +
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTI 41
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLG 324
+ F+EF+ +AEDA NG +MLG
Sbjct: 40 YGFVEFDYSDDAEDAVYECNGKKMLG 65
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKL 214
+V++G L G+K D+ F KYG +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 28.7 bits (61), Expect = 4.6
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLN 217
++++GGL +ED+++ F ++GK++
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 380 SEVGAAVTSGVVVHSEVREEAGLTTH 457
S+VG+ VT +VVH +EEA L+ H
Sbjct: 35 SDVGSQVTLLLVVHESKKEEAKLSLH 60
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKL 214
T VYVG L +K +L++ F +YG +
Sbjct: 615 TTVYVGNLPPDVKDYELQQMFSQYGSI 641
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,707,587
Number of Sequences: 59808
Number of extensions: 267794
Number of successful extensions: 641
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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