Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30402
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 51 9e-07
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 51 9e-07
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 51 9e-07
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 41 0.001
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 41 0.001
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 36 0.036
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 36 0.036
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 36 0.036
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 34 0.082
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 34 0.082
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 34 0.082
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 34 0.082
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 34 0.082
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 32 0.44
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 32 0.44
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 31 0.58
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 31 0.58
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 30 1.3
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 30 1.3
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 30 1.3
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 30 1.8
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 29 3.1
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 29 4.1
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 29 4.1
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 29 4.1
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 29 4.1
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 4.1
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 29 4.1
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 27 9.4
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 27 9.4
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 27 9.4
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA 253
+VYVGGL ++LE FD++G++ VWVA PPGFA
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFA 42
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/53 (32%), Positives = 34/53 (64%)
Frame = +1
Query: 190 RVR*IWKTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
R+R +W + + P F F+E++++++AEDA A++G+ + G +VE+S
Sbjct: 28 RIRKVWVAR------RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA 253
+VYVGGL ++LE FD++G++ VWVA PPGFA
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFA 42
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/53 (32%), Positives = 34/53 (64%)
Frame = +1
Query: 190 RVR*IWKTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
R+R +W + + P F F+E++++++AEDA A++G+ + G +VE+S
Sbjct: 28 RIRKVWVAR------RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA 253
+VYVGGL ++LE FD++G++ VWVA PPGFA
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFA 42
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/53 (32%), Positives = 34/53 (64%)
Frame = +1
Query: 190 RVR*IWKTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
R+R +W + + P F F+E++++++AEDA A++G+ + G +VE+S
Sbjct: 28 RIRKVWVAR------RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 217 LSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+ + S + P F F+EFE+ ++AEDA A +G E G ++VE +R
Sbjct: 38 VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 119 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
M GG+ +VYVG L ++++++E F KYG++ V
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV 38
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 217 LSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+ + S + P F F+EFE+ ++AEDA A +G E G ++VE +R
Sbjct: 38 VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 119 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
M GG+ +VYVG L ++++++E F KYG++ V
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV 38
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/37 (40%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLK--VEISR 351
F F++FE+ ++AEDAC ++G M G++++ VE++R
Sbjct: 37 FAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
R+Y+G + ++ D+ER YGK+N++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/37 (40%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLK--VEISR 351
F F++FE+ ++AEDAC ++G M G++++ VE++R
Sbjct: 37 FAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
R+Y+G + ++ D+ER YGK+N++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/37 (40%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLK--VEISR 351
F F++FE+ ++AEDAC ++G M G++++ VE++R
Sbjct: 37 FAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
R+Y+G + ++ D+ER YGK+N++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEI 345
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 378 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEI 345
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEI 345
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEI 345
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 471 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEI 345
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 232 TKSPR-FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 354
T PR F FIEF A+ A MNG E G L+V ++ K
Sbjct: 42 TGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLANK 83
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 354
F F++F++ ++A+DA +NG E+ G + +E R+
Sbjct: 37 FGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRR 72
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGF 250
RVY+G L D+E F YGKL+ V + N GF
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKNGFGF 39
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 208 KTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
K + + +S F F+ ++N+ ++ A +AMNG ++ LKV++ R
Sbjct: 459 KVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
F F+EF++ ++AEDA +NG E+ G + ++ S+
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
R+Y+G L + ++D+E F YG++ V
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
F F+EF++ ++AEDA +NG E+ G + ++ S+
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
R+Y+G L + ++D+E F YG++ V
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
F F+EF++ ++AEDA +NG E+ G + ++ S+
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
R+Y+G L + ++D+E F YG++ V
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 208 KTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
K + + +S F F+ ++N+ ++ A +AMNG ++ LKV++ R
Sbjct: 459 KVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVE 342
K + FIEF ++Q AE A +NG E+ G L+V+
Sbjct: 57 KPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSVW 226
+V+VGGL +K+ D+ F +YG+L W
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYGRLQVDW 118
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 182 LEREFDKYGKLNSVWVALNPPGFA 253
+E F G + S+W+A PPGFA
Sbjct: 44 IEAVFSVMGPIKSIWMAKRPPGFA 67
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
+V+VGGL ++DL F+++GK++ +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDI 139
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 116 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 214
T + +++VGG+ + EDL F +YG++
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
+V+VGGL ++DL F+++GK++ +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDI 139
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 116 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 214
T + +++VGG+ + EDL F +YG++
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVE 342
+ +E+E +EA +A N T++LG +KV+
Sbjct: 98 YALVEYETQKEANEAIDQSNDTDLLGQNVKVD 129
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
+ ++E++NL++AE + M+G ++ G + VE++
Sbjct: 177 YGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMT 210
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 256 IEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 351
+EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 165 VEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 256 IEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 351
+EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 165 VEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 354
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 256 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 294
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 253 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 291
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 354
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKV 339
F ++ FEN Q+ A S +NG + LKV
Sbjct: 55 FAYVTFENEQQMNTAISGLNGADFGNRVLKV 85
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 353 SGTGPAEVGSEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGRT 484
S PA + V AV + + V A +TT TVAAAA T
Sbjct: 199 STAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAAATT 242
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 232 TKSPR-FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
T PR F F+EF A+ A NG + G L+V +++
Sbjct: 41 TGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQ 81
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 232 TKSPR-FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 354
T PR F F+EF A+ A +NG G L+V + K
Sbjct: 43 TGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYANK 84
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
R+YV + +++DL F YG++ SV + N G
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRG 88
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
R+YV + +++DL F YG++ SV + N G
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRG 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,825,903
Number of Sequences: 27780
Number of extensions: 198972
Number of successful extensions: 642
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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