Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30401
(745 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 48 5e-06
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 48 5e-06
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 48 5e-06
U21323-12|AAA62554.2| 354|Caenorhabditis elegans Hypothetical p... 33 0.16
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 31 1.1
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 31 1.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 31 1.1
U58728-2|AAB00589.2| 240|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z19157-3|CAA79566.3| 395|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z49967-2|CAA90248.2| 450|Caenorhabditis elegans Hypothetical pr... 28 6.1
U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in bl... 28 6.1
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81069-5|CAB02995.1| 504|Caenorhabditis elegans Hypothetical pr... 28 8.0
U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusi... 28 8.0
U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusi... 28 8.0
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/75 (37%), Positives = 39/75 (52%)
Frame = +3
Query: 3 ELLAVYEAIRYFRYMVEARTFAVLTDHKPLTYAFTTRRDSCSPRQYRYLDYISQFSTDIR 182
E LA+ A+R F+ ++ V TDHKPL + + R +R+ I +F I
Sbjct: 1377 EALAMMFALRRFKTIIYGTAITVFTDHKPLISLL--KGSPLADRLWRWSIEILEFDVKIV 1434
Query: 183 YIPGKDNVVADTLSR 227
Y+ GK N VAD LSR
Sbjct: 1435 YLAGKANAVADALSR 1449
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/75 (37%), Positives = 39/75 (52%)
Frame = +3
Query: 3 ELLAVYEAIRYFRYMVEARTFAVLTDHKPLTYAFTTRRDSCSPRQYRYLDYISQFSTDIR 182
E LA+ A+R F+ ++ V TDHKPL + + R +R+ I +F I
Sbjct: 1280 EALAMMFALRRFKTIIYGTAITVFTDHKPLISLL--KGSPLADRLWRWSIEILEFDVKIV 1337
Query: 183 YIPGKDNVVADTLSR 227
Y+ GK N VAD LSR
Sbjct: 1338 YLAGKANAVADALSR 1352
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/75 (37%), Positives = 39/75 (52%)
Frame = +3
Query: 3 ELLAVYEAIRYFRYMVEARTFAVLTDHKPLTYAFTTRRDSCSPRQYRYLDYISQFSTDIR 182
E LA+ A+R F+ ++ V TDHKPL + + R +R+ I +F I
Sbjct: 1291 EALAMMFALRRFKTIIYGTAITVFTDHKPLISLL--KGSPLADRLWRWSIEILEFDVKIV 1348
Query: 183 YIPGKDNVVADTLSR 227
Y+ GK N VAD LSR
Sbjct: 1349 YLAGKANAVADALSR 1363
>U21323-12|AAA62554.2| 354|Caenorhabditis elegans Hypothetical
protein C45G9.11 protein.
Length = 354
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -2
Query: 738 RAGNYLGPSTVTVNKRKTKPVTIRNR*RSDNVHVYVTKTSSR*FKLGQRCC 586
+ G Y ++ TVN K V RNR +++ V TK SR +L CC
Sbjct: 141 KVGQYFEKASGTVNHHYQKVVLFRNRMKANKVAPIHTKVQSRHLELEPLCC 191
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 3/116 (2%)
Frame = +3
Query: 255 STSPSPKLRKPIPNSITSSEKAQVSHSKVLEYPAQMSTCTATCQHQFHDHTSLSNS---E 425
S+SP P + P PN+ +++ S S ST T + Q S ++S
Sbjct: 386 SSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGS 445
Query: 426 DRYSIICTTSVIRVERLQSNSSPTASYGRHTQGLQQMGEGMSGMSTLQGA*THSST 593
+ T V + S SS + + SGMSTL + SST
Sbjct: 446 TGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSST 501
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 3/116 (2%)
Frame = +3
Query: 255 STSPSPKLRKPIPNSITSSEKAQVSHSKVLEYPAQMSTCTATCQHQFHDHTSLSNS---E 425
S+SP P + P PN+ +++ S S ST T + Q S ++S
Sbjct: 593 SSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGS 652
Query: 426 DRYSIICTTSVIRVERLQSNSSPTASYGRHTQGLQQMGEGMSGMSTLQGA*THSST 593
+ T V + S SS + + SGMSTL + SST
Sbjct: 653 TGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSST 708
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 3/116 (2%)
Frame = +3
Query: 255 STSPSPKLRKPIPNSITSSEKAQVSHSKVLEYPAQMSTCTATCQHQFHDHTSLSNS---E 425
S+SP P + P PN+ +++ S S ST T + Q S ++S
Sbjct: 593 SSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGS 652
Query: 426 DRYSIICTTSVIRVERLQSNSSPTASYGRHTQGLQQMGEGMSGMSTLQGA*THSST 593
+ T V + S SS + + SGMSTL + SST
Sbjct: 653 TGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSST 708
>U58728-2|AAB00589.2| 240|Caenorhabditis elegans Hypothetical
protein C54H2.4 protein.
Length = 240
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 465 VERLQSNSSPTASYGRHTQGLQQMGEG 545
+E+ ++ PTA Y H QGL+Q+G G
Sbjct: 160 LEKDETEDIPTAGYSGHIQGLRQLGVG 186
>Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical
protein F32B4.4b protein.
Length = 663
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 231 EEVGAATLSTSPSPKLRKPIPNSITSSEKAQVSHSKVLEYPAQ 359
E V T +TS +PK ++PI +SS + Q + + +E P +
Sbjct: 102 EPVVTTTTTTSAAPKRKEPIHAPESSSSEGQRAKRRAIEAPVR 144
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 231 EEVGAATLSTSPSPKLRKPIPNSITSSEKAQVSHSKVLEYPAQ 359
E V T +TS +PK ++PI +SS + Q + + +E P +
Sbjct: 210 EPVVTTTTTTSAAPKRKEPIHAPESSSSEGQRAKRRAIEAPVR 252
>Z19157-3|CAA79566.3| 395|Caenorhabditis elegans Hypothetical
protein ZC84.4 protein.
Length = 395
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 132 RQYRYL--DYISQFSTDIRYIPGKDNVVADTLSRIEEVGAATLSTSPSPKLRKPIPN 296
R++R L + SQ T IR IPG + L+R EE+ + +++ + R+ +P+
Sbjct: 329 RRFRSLTDEASSQIRTAIRTIPGTKMKKNEFLTRTEEISSDKIASEAVSEFREGLPS 385
>Z49967-2|CAA90248.2| 450|Caenorhabditis elegans Hypothetical
protein F54C9.2 protein.
Length = 450
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 537 PSAAVLAYAFHTKRSVMSLIVAFLPG 460
P+AA LAY H K+ V +++V L G
Sbjct: 211 PTAAALAYGLHKKQGVENVVVVDLGG 236
>U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 10 protein.
Length = 375
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 351 PAQMSTCTATCQHQFHDHTSLSNSEDRYSIICTTSVIR 464
PA S+CTA+ +Q H+S + S D +C ++
Sbjct: 316 PACQSSCTASYTNQQSQHSSATTSCDANQCVCQRGYVK 353
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +3
Query: 261 SPSPKLRKPIPNSITSSEKA--QVSHSKVLEYPAQMSTCTATCQHQFHDHTSLSNSEDRY 434
SP P + K I + SEK QVS P T ++T H+ T L+NS Y
Sbjct: 278 SPQPPITKTIEVKVERSEKVEQQVSEPTKRAPPTAAQTASSTSSRIQHNQT-LNNSNATY 336
Query: 435 S 437
+
Sbjct: 337 A 337
>Z81069-5|CAB02995.1| 504|Caenorhabditis elegans Hypothetical
protein F25H9.5 protein.
Length = 504
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 246 ATLSTSPSPKLRKPIPNSITSSEKAQVS--HSKVLEYPAQMSTCTATCQHQ 392
A L T +L + +S +SS+ + S HS+++E CTA C +
Sbjct: 426 ALLKTMTGRRLDRSSSDSSSSSDSSTSSTKHSRIIESKLDFKNCTAGCNRK 476
>U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform b protein.
Length = 561
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 564 ALTFLT-FLRPSAAVLAYAFHTKRSVMSLIVAF 469
AL F+T + S A+LA ++H VM+LIVAF
Sbjct: 125 ALEFITGVVCSSIAMLADSYHMAADVMALIVAF 157
>U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform a protein.
Length = 519
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 564 ALTFLT-FLRPSAAVLAYAFHTKRSVMSLIVAF 469
AL F+T + S A+LA ++H VM+LIVAF
Sbjct: 83 ALEFITGVVCSSIAMLADSYHMAADVMALIVAF 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,962,452
Number of Sequences: 27780
Number of extensions: 358232
Number of successful extensions: 1306
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -