Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30401
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    35   0.065
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    35   0.065
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma...    32   0.46 
At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3...    29   3.3  
At3g08650.2 68416.m01005 metal transporter family protein contai...    29   3.3  
At3g08650.1 68416.m01004 metal transporter family protein contai...    29   3.3  
At2g31160.1 68415.m03804 expressed protein contains Pfam profile...    29   3.3  
At1g55050.1 68414.m06288 expressed protein ; expression supporte...    29   3.3  
At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger) fa...    28   5.7  
At1g19930.1 68414.m02498 kelch repeat-containing F-box family pr...    28   5.7  
At5g24100.1 68418.m02830 leucine-rich repeat transmembrane prote...    28   7.5  
At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa...    28   7.5  
At3g44690.1 68416.m04806 expressed protein                             28   7.5  
At5g24310.1 68418.m02861 expressed protein strong similarity to ...    27   9.9  
At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repe...    27   9.9  

>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 12/58 (20%), Positives = 36/58 (62%)
 Frame = +3

Query: 252 LSTSPSPKLRKPIPNSITSSEKAQVSHSKVLEYPAQMSTCTATCQHQFHDHTSLSNSE 425
           LS+ P P++++  PNS  +  ++++ H + L+ P++  + +   +H  ++ ++ +N++
Sbjct: 45  LSSPPPPRIKRRRPNSNDADLESELDHERYLDLPSESPSPSDDDEHDMNEDSANTNAD 102


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 12/58 (20%), Positives = 36/58 (62%)
 Frame = +3

Query: 252 LSTSPSPKLRKPIPNSITSSEKAQVSHSKVLEYPAQMSTCTATCQHQFHDHTSLSNSE 425
           LS+ P P++++  PNS  +  ++++ H + L+ P++  + +   +H  ++ ++ +N++
Sbjct: 45  LSSPPPPRIKRRRPNSNDADLESELDHERYLDLPSESPSPSDDDEHDMNEDSANTNAD 102


>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
           domain-containing protein contains Pfam profiles
           PF00612: IQ calmodulin-binding motif, PF02179: BAG
           (Apoptosis regulator Bcl-2 protein) domain
          Length = 1043

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +3

Query: 186 IPGKDNVVADTLSRIEEVGAATLSTS--PSPKLRKPIPNSITSSE-KAQVSHSKVLEYPA 356
           + G+D   A      EE+G  T  TS  PS + R  +  S +S+E + ++ + K +EYP 
Sbjct: 239 LQGQDMKEAQIQKNKEELGQLTYPTSWVPSRRKRDDVEASESSNEDRKKMQNGKTVEYPF 298

Query: 357 QMSTCTATCQHQ 392
            +S   +  Q Q
Sbjct: 299 DISMIKSLIQGQ 310


>At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3)
           contains Pfam profile: Myb DNA-binding proteins;
           identical to cDNA putative c-myb-like transcription
           factor (MYB3R3) GI:15375285
          Length = 505

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +3

Query: 42  YMVEARTFAVLTDHKPLTYAFTTRRDSCSPRQYRYLDYISQFSTDIRYIPGKDNVVADTL 221
           Y++  R     T    +  + T R  S   R +  +   S  +TD+  +    N   ++ 
Sbjct: 234 YLLTGRLPPPTTTRNGVPDSVTKRSSSAQKRVFGSVAQTSSVTTDVNNLAEDGNGQINSS 293

Query: 222 SRIEEVGAATLSTSPSPKLRKP-IPN 296
             +EEV AA+  TS +   R P +PN
Sbjct: 294 VPVEEVVAASRMTSLNEYARSPQLPN 319


>At3g08650.2 68416.m01005 metal transporter family protein contains
           ZIP Zinc transporter domain, Pfam:PF02535
          Length = 619

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 289 IGFLSLGEGLVLSVAAPTSSMRERVSATTLSLPGM*R 179
           +GF +L EGL L VAAP +    R     +SL G+ R
Sbjct: 471 VGFHALAEGLALGVAAPNAYGLGRHMVLPVSLHGLPR 507


>At3g08650.1 68416.m01004 metal transporter family protein contains
           ZIP Zinc transporter domain, Pfam:PF02535
          Length = 595

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 289 IGFLSLGEGLVLSVAAPTSSMRERVSATTLSLPGM*R 179
           +GF +L EGL L VAAP +    R     +SL G+ R
Sbjct: 447 VGFHALAEGLALGVAAPNAYGLGRHMVLPVSLHGLPR 483


>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 219

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 273 KLRKPIPNSITSSEKAQVSHSKVLEYPAQMST 368
           K ++P+P+S TSS  A  SH +    P   ST
Sbjct: 181 KRKRPLPSSSTSSSSAVASHQQFQMLPGTSST 212


>At1g55050.1 68414.m06288 expressed protein ; expression supported
           by MPSS
          Length = 914

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +3

Query: 264 PSPKLRKPIPNSITSSEKAQVSHSKVLEYPAQMST---CTATCQHQFHDHTSLSNSEDRY 434
           PS   ++  PN + SS++    H + +    Q       ++  Q  FH+H+S    +D  
Sbjct: 659 PSSSAQQQEPNGLRSSKEQGALHDEPISLAQQQEPNGLYSSKEQGAFHEHSSTEQQQDES 718

Query: 435 SIICTTSV 458
           + +C   +
Sbjct: 719 NRLCLDKI 726


>At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger)
           family protein very low similarity to SP|P97280
           Inter-alpha-trypsin inhibitor heavy chain H3 precursor
           {Mesocricetus auratus}; contains Pfam profiles PF00097:
           Zinc finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 692

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 252 LSTSPSPKLRKPIPNSITSSEKAQVSHSKVLEYPAQMSTCTATCQHQFHDHTSLSN 419
           ++ +PS    K   NS  SS+   +  +K+ E     +  TA C H FH H   SN
Sbjct: 50  MTPTPSSHGLKLSRNSSKSSKTCSICLNKMKEGGGH-ALFTAECSHSFHFHCIASN 104


>At1g19930.1 68414.m02498 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 344

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/74 (27%), Positives = 25/74 (33%)
 Frame = -2

Query: 297 SSVSVF*AWARDWYLASQLLPLRCGKXXXXXXXXXXXCSGCRLRTGKCSPSTCIVVVNSC 118
           SSVS+   W+  W     +   R                GCRL    C   T  VVV+  
Sbjct: 136 SSVSILDCWSHTWLEGPSMQVEREYPSASLLDGKIYVTGGCRLTFHGCGDQTDNVVVDGK 195

Query: 117 LDVW*RHKSTVYGP 76
           L     +K   Y P
Sbjct: 196 LHSCGGYKGVAYNP 209


>At5g24100.1 68418.m02830 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 614

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 438 WNTCLRNCSVMYGRGTDVDMSQYTSTSVPGTLTLLSVRLEPSRMRLLSSVSV 283
           WNT    C+   G   D+D ++ T+  +PG  +LL V + P  +  LS + +
Sbjct: 52  WNTSSPVCTTWPGVTCDIDGTRVTALHLPGA-SLLGV-IPPGTISRLSELQI 101


>At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 675

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 252 LSTSPSPKLRKPIPNSITSSEKAQVSHSKVLEYPAQMSTCTATCQHQFHDHTSLSN 419
           ++ +PS   R+   +S  SS+   +  +K+ E     +  TA C H FH H   SN
Sbjct: 52  MTPTPSSYRRRLSRSSSKSSKTCSICLNKMKEGCGH-AIFTAECSHMFHFHCIASN 106


>At3g44690.1 68416.m04806 expressed protein 
          Length = 1176

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 502 RMEGIRKDCSRWAKECQECQRCKVHKHTAAPLSQFKLPTARFRHVHMDIIGPLPISDSYR 681
           R+E I ++CS  ++  ++ +    +++ ++PLSQ     A F+    D    L  SDS  
Sbjct: 159 RLESISRECSDSSRHSEDGRERDTYRYESSPLSQVGSSVADFQ----DESSRLVSSDSRS 214

Query: 682 F-CLTLVDRHSR 714
           F C+   D   R
Sbjct: 215 FGCVNDSDERRR 226


>At5g24310.1 68418.m02861 expressed protein strong similarity to
           unknown protein (emb|CAB66408.1)
          Length = 321

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = +3

Query: 213 DTLSRIEEVGAATLSTSPSPKLRKPI---PNSITSSEKAQVSHSKVLEYPAQMSTCTATC 383
           D  ++      AT+  +P P +RKPI   P+       A  S S +   P +     A  
Sbjct: 167 DDWNQFRNAVRATIRETPPPPVRKPILQSPSQRKPQRSATFSFSSIATAPKKEQDKRAVS 226

Query: 384 QHQF 395
            H+F
Sbjct: 227 PHRF 230


>At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repeat
           (PF00400); 42% similarity to fimbriae-associated protein
           Fap1 (gi:3929312) [Streptococcus parasanguinis]
          Length = 994

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 45  MVEARTFAVLTDHK-PLTYAFTTRRDSCSPRQYRYL 149
           M  A    V+T+H  P+ YAF   RDS   RQ++ +
Sbjct: 507 MQRASIAKVITEHTAPVVYAFFLGRDSQGSRQFKVI 542


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,904,078
Number of Sequences: 28952
Number of extensions: 327274
Number of successful extensions: 1022
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)