Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30400
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 123 2e-29
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 115 6e-27
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 97 2e-21
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 79 5e-16
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 72 1e-13
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 71 2e-13
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 71 2e-13
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 69 5e-13
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 67 2e-12
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 55 9e-09
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 55 1e-08
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 54 2e-08
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 54 2e-08
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 54 3e-08
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 51 2e-07
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 50 3e-07
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 48 1e-06
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 44 3e-05
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 43 5e-05
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 42 1e-04
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 41 2e-04
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 29 0.92
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 28 1.2
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 28 1.6
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 27 2.8
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 27 3.7
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 26 4.9
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 6.5
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 26 6.5
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 6.5
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 25 8.6
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 123 bits (297), Expect = 2e-29
Identities = 57/71 (80%), Positives = 65/71 (91%)
Frame = +3
Query: 42 KTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIW 221
K+YD L KLLLIGDSGVGK+ +L RFSED+F SFI+TIGIDFKIRTI+LDGK++KLQIW
Sbjct: 4 KSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIW 63
Query: 222 DTAGQERFRTI 254
DTAGQERFRTI
Sbjct: 64 DTAGQERFRTI 74
Score = 117 bits (281), Expect = 2e-27
Identities = 50/89 (56%), Positives = 73/89 (82%)
Frame = +2
Query: 254 TTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSK 433
TTAYYRG+MGI+L+YDVT++KSF+N++ W N+E++AS +V K+++GNKCD + QRQVS
Sbjct: 75 TTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSF 134
Query: 434 ERGEQLAIEYQIKFVETSAKDSLNVNMHF 520
E+G+ LA E +KF+E SAK ++NV+ F
Sbjct: 135 EQGQALADELGVKFLEASAKTNVNVDEAF 163
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 115 bits (277), Expect = 6e-27
Identities = 53/73 (72%), Positives = 62/73 (84%)
Frame = +3
Query: 36 MAKTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQ 215
M YD LFKLLLIGDSGVGK+ +L RF++D + S+ISTIG+DFKIRT +L+GK VKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 216 IWDTAGQERFRTI 254
IWDTAGQERFRTI
Sbjct: 61 IWDTAGQERFRTI 73
Score = 86.6 bits (205), Expect = 3e-18
Identities = 38/89 (42%), Positives = 59/89 (66%)
Frame = +2
Query: 254 TTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSK 433
T++YYRG+ GI++VYDVT++ SF N+K W++ I+ A V ++++GNK D+ ++ V
Sbjct: 74 TSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEY 133
Query: 434 ERGEQLAIEYQIKFVETSAKDSLNVNMHF 520
++ A I F+ETSAKDS NV F
Sbjct: 134 SVAKEFADSLNIPFLETSAKDSTNVEQAF 162
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 97.1 bits (231), Expect = 2e-21
Identities = 44/69 (63%), Positives = 54/69 (78%)
Frame = +3
Query: 48 YDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDT 227
YD LFK +LIGDSGVGK+++L RF+ + FNI STIG++F R I LD KK+K QIWDT
Sbjct: 7 YDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDT 66
Query: 228 AGQERFRTI 254
AGQER+R I
Sbjct: 67 AGQERYRAI 75
Score = 90.2 bits (214), Expect = 3e-19
Identities = 38/89 (42%), Positives = 60/89 (67%)
Frame = +2
Query: 254 TTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSK 433
T+AYYRG++G ++VYD+T + SF+N+ W++ + E+A +++ M++GNK DL R VS
Sbjct: 76 TSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVST 135
Query: 434 ERGEQLAIEYQIKFVETSAKDSLNVNMHF 520
E + A E + F+ETSA D+ NV F
Sbjct: 136 EEAQAFAAENNLSFIETSAMDASNVEEAF 164
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 79.4 bits (187), Expect = 5e-16
Identities = 34/65 (52%), Positives = 51/65 (78%)
Frame = +3
Query: 60 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQE 239
FKL+ +G+ VGKTS++ RF D F+ ++ +TIGIDF +T+ L+ + V+LQ+WDTAGQE
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71
Query: 240 RFRTI 254
RFR++
Sbjct: 72 RFRSL 76
Score = 76.2 bits (179), Expect = 5e-15
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = +2
Query: 260 AYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKER 439
+Y R S ++VYD+TN SF N + WI ++ DV +++GNK DL +RQV++E
Sbjct: 79 SYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEE 138
Query: 440 GEQLAIEYQIKFVETSAKDSLNVNMHF 520
GE+ A E +I +ETSAK NV + F
Sbjct: 139 GEKKAKELKIMHMETSAKAGHNVKLLF 165
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 71.7 bits (168), Expect = 1e-13
Identities = 31/66 (46%), Positives = 49/66 (74%)
Frame = +3
Query: 57 LFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQ 236
L K++++G+SGVGKTSI+ ++ F+ + +TIG DF + + +D K V LQ+WDTAGQ
Sbjct: 8 LLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQ 67
Query: 237 ERFRTI 254
ERF+++
Sbjct: 68 ERFQSL 73
Score = 58.0 bits (134), Expect = 1e-09
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Frame = +2
Query: 260 AYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEK----MILGNKCDLDSQ-RQ 424
A+YRG+ +LVYDV N KSFE + +W AS + ++LGNK D++ Q R
Sbjct: 76 AFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRM 135
Query: 425 VSKERGEQLA-IEYQIKFVETSAKDSLNVNMHF 520
VSK + +I + ETSAK+++NV F
Sbjct: 136 VSKSKALAFCQARGEIPYFETSAKEAINVQEAF 168
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Frame = +3
Query: 42 KTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDL----DGKKVK 209
++YD L K++L G SG GK+ +L RF ++ ++ T+GIDF R I + K++K
Sbjct: 4 ESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIK 63
Query: 210 LQIWDTAGQERFRTIQQH 263
LQIWDTAGQE+FR++ ++
Sbjct: 64 LQIWDTAGQEKFRSVARN 81
Score = 70.1 bits (164), Expect = 3e-13
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +2
Query: 263 YYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKERG 442
YYRG+ G +LVYDVTN+ SFE + +W+ +I A + + ++ G+K DL +QRQVS E
Sbjct: 82 YYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEA 141
Query: 443 EQLAIEYQIKFV-ETSAKDSLNVNMHF 520
+ E I ETS+ NV F
Sbjct: 142 AEFCSEKHISSAHETSSYTGSNVEECF 168
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 70.9 bits (166), Expect = 2e-13
Identities = 30/64 (46%), Positives = 47/64 (73%)
Frame = +3
Query: 63 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 242
K++++GDSGVGKT ++ +F F+ + +TIG DF + + +D K V LQ+WDTAGQER
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 243 FRTI 254
F+++
Sbjct: 70 FQSL 73
Score = 47.2 bits (107), Expect = 2e-06
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Frame = +2
Query: 260 AYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASAD---VEKMILGNKCDLD-SQRQV 427
A+YRG+ ++VY+V N KSF++++NW + S D +I+GN+ D D S+R V
Sbjct: 76 AFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKDASKRAV 135
Query: 428 SKERG-EQLAIEYQIKFV--ETSAKDSLNV 508
S R + ++ + E SAK++ NV
Sbjct: 136 SLHRALDYCKSKHGSNMIHFEASAKENTNV 165
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 69.3 bits (162), Expect = 5e-13
Identities = 33/65 (50%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = +3
Query: 63 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLD-GKKVKLQIWDTAGQE 239
KL+L+GDS VGK+S++ RF +D F+ STIG F +T+ +D VKL+IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 240 RFRTI 254
R++++
Sbjct: 76 RYKSL 80
Score = 66.9 bits (156), Expect = 3e-12
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +2
Query: 263 YYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQ-VSKER 439
YYR + ++VYD+T S E K+WI+ ++ A + + GNK DL +R+ V K
Sbjct: 84 YYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERRAVEKAD 143
Query: 440 GEQLAIEYQIKFVETSAKDSLNVNMHFT 523
E A E + F ETSAK + NVN FT
Sbjct: 144 AEAYAAEANLLFFETSAKTAENVNELFT 171
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 67.3 bits (157), Expect = 2e-12
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +2
Query: 263 YYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMIL-GNKCDLDSQRQVSKER 439
Y R G +LVY++T+ SF+ I + + I D ++L NKCDL+++R VS+
Sbjct: 76 YMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAE 135
Query: 440 GEQLAIEYQIKFVETSAKDSLNVNMHF 520
GEQLA +VETSAK LNV F
Sbjct: 136 GEQLAKSMHCLYVETSAKLRLNVEEAF 162
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/75 (30%), Positives = 44/75 (58%)
Frame = +3
Query: 36 MAKTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQ 215
M TY +KL+++GD GVGK+++ + + F + TI ++ + ++DG+ L
Sbjct: 1 MRSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KKCEIDGEGALLD 59
Query: 216 IWDTAGQERFRTIQQ 260
+ DTAGQE + +++
Sbjct: 60 VLDTAGQEEYSAMRE 74
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 55.2 bits (127), Expect = 9e-09
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +2
Query: 272 GSMGIMLVYDVTNEKSFENIKNWIRNIEENASAD-VEKMILGNKCDLDSQRQVSKERGEQ 448
G G +LVY +T++ SFE +K I + + V +++GNK DL QR V+ E G+
Sbjct: 77 GIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAEEGKA 136
Query: 449 LAIEYQIKFVETSAKDSLNVNMHFTL 526
LA E++ + E SA+ + NV F L
Sbjct: 137 LANEWKCAWTEASARHNENVARAFEL 162
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/92 (22%), Positives = 47/92 (51%)
Frame = +3
Query: 63 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 242
++ ++G VGK+S+ ++ E+ F S+ TI F + I G++ +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFS-KNIKYKGQEFATEIIDTAGQDE 66
Query: 243 FRTIQQHTTVVLWELCLSTMLRMRRALKTLRI 338
+ + ++ + L + + + + ++I
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKI 98
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 54.8 bits (126), Expect = 1e-08
Identities = 23/61 (37%), Positives = 41/61 (67%)
Frame = +3
Query: 63 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 242
KL+++GD GKT +L FS+ F ++ T+ ++ + +++DG+ V+L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHVELALWDTAGQED 66
Query: 243 F 245
+
Sbjct: 67 Y 67
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 54.4 bits (125), Expect = 2e-08
Identities = 22/61 (36%), Positives = 41/61 (67%)
Frame = +3
Query: 63 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 242
KL+++GD GKT +L FS+ F ++ T+ ++ + +++DG+ ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHIELALWDTAGQED 66
Query: 243 F 245
+
Sbjct: 67 Y 67
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 54.0 bits (124), Expect = 2e-08
Identities = 22/69 (31%), Positives = 40/69 (57%)
Frame = +3
Query: 39 AKTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQI 218
A+ + K+ +IGDS +GKTS++ + + +F+ T+G++F +TI + ++ I
Sbjct: 4 ARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSI 63
Query: 219 WDTAGQERF 245
WD GQ F
Sbjct: 64 WDLGGQREF 72
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 53.6 bits (123), Expect = 3e-08
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = +3
Query: 63 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 242
KL+++GD GKTS+L F+ F ++ T+ ++ + +DGK V+L +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENY-VSDCRVDGKSVQLALWDTAGQEE 68
Query: 243 FRTIQ 257
+ ++
Sbjct: 69 YERLR 73
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +3
Query: 60 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQE 239
FKL+L+GD G GKT+ + R F +I+T+G++ + ++ +WDTAGQE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 240 R 242
+
Sbjct: 70 K 70
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/86 (25%), Positives = 48/86 (55%)
Frame = +2
Query: 263 YYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKERG 442
Y +G GI++ +DVT+ +++N+ +W R++ ++ ++ GNK D+ +R+V K +
Sbjct: 79 YIQGQCGIIM-FDVTSRITYKNVPHWWRDL-VRVCENIPIVLCGNKVDV-KERKV-KAKA 134
Query: 443 EQLAIEYQIKFVETSAKDSLNVNMHF 520
+ +++ + SAK + N F
Sbjct: 135 ITFHRKKNLQYYDISAKSNYNFEKPF 160
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/61 (39%), Positives = 39/61 (63%)
Frame = +3
Query: 63 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 242
K++++GD GKTS+L F++ F + TI ++ I I +DG ++L +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENY-IHDIFVDGNSIELSLWDTAGQEE 73
Query: 243 F 245
+
Sbjct: 74 Y 74
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3
Query: 63 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIR-TIDLDGKKVKLQIWDTAGQE 239
KL+++GD G GKT +L FS F ++ T+ ++ T + K ++L +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 240 RF 245
+
Sbjct: 76 EY 77
Score = 25.4 bits (53), Expect = 8.6
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Frame = +2
Query: 266 YRGSMGIMLVYDVTNEKSFENI-KNWIRNIEENASADVEKMILGNKCDLDSQRQ------ 424
Y S I+L + + S N+ + W ++ +++G K DL R
Sbjct: 85 YPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPR-TPIVLVGLKADLRKDRNATEVLR 143
Query: 425 ------VSKERGEQLAIEYQIKFVETSAKDSLNVNMHFTL 526
V+ ++ + +A+ +VE SAK++ VN F L
Sbjct: 144 TQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVFQL 183
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +3
Query: 63 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 242
++L++G GKT+IL++ N S ++ + F + T+ K +K +WD GQ++
Sbjct: 23 RILMLGLDAAGKTTILYKLK---LNQSVVTIPTVGFNVETVTY--KNIKFNVWDVGGQDK 77
Query: 243 FRTIQQH 263
R + +H
Sbjct: 78 IRPLWRH 84
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 42.7 bits (96), Expect = 5e-05
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Frame = +3
Query: 27 VVKMAKTYDCLFKLLLIGDSGVGKTSIL-FRFSEDAFNISFISTIGIDFKIRTIDLDGKK 203
+++ K + ++LL+G GKT+IL +ED +S T G F+IRT++++G
Sbjct: 6 ILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVS--PTFG--FQIRTLEVEG-- 59
Query: 204 VKLQIWDTAGQERFRTIQQH----TTVVLWELCLSTMLRMRRALKTLR 335
++ IWD GQ+ R ++ T ++W + LR+ TL+
Sbjct: 60 LRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQ 107
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/67 (28%), Positives = 38/67 (56%)
Frame = +3
Query: 63 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 242
++L++G GKT+IL++ ++ I TIG F + T++ + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEY--RNISFTVWDVGGQDK 73
Query: 243 FRTIQQH 263
R + +H
Sbjct: 74 IRPLWRH 80
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/61 (29%), Positives = 37/61 (60%)
Frame = +3
Query: 63 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 242
K +++GD VGKT +L ++ + F ++ T+ ++ + T+ + + L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQED 63
Query: 243 F 245
+
Sbjct: 64 Y 64
Score = 31.5 bits (68), Expect = 0.13
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Frame = +2
Query: 287 MLVYDVTNEKSFENIK-NWIRNIEENASADVEKMILGNKCDL------------DSQRQV 427
++ + VT+ SFEN+K W + + V +I+G + DL Q +
Sbjct: 79 LVCFSVTSPASFENVKEKWFPEVHHHCPG-VPCLIVGTQIDLRDDPSVQQKLARQHQHPL 137
Query: 428 SKERGEQLAIEY-QIKFVETSA 490
+ E+GE+LA E +K+VE SA
Sbjct: 138 THEQGERLARELGAVKYVECSA 159
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.92
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 75 IGDSGVGKTSILFRFSEDAFNISFISTIGIDFKI 176
IGD V ++LFRF + +F + I +GID I
Sbjct: 423 IGDMVVFSKNVLFRFIQLSFYVGMIVILGIDLFI 456
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 63 KLLLIGDSGVGKTSIL-FRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQE 239
K+LL+G SG GK+S+ FS + ID + + G V L +WD GQE
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQE 62
Query: 240 RF 245
F
Sbjct: 63 AF 64
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +2
Query: 230 WSREIPYNTTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEE 358
W + Y + Y+ + +++VY+ + + E K W+ + EE
Sbjct: 155 WMSSMLYACSMLYKAKLPLIIVYNKCDVQDSEFAKKWMTDFEE 197
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 281 GIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILG 394
GI L+ + E ++ +++ I+ENA + V +++LG
Sbjct: 947 GINLITSLIKEYGKNSVLRYMKAIQENAESAVRQLLLG 984
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 375 TSALAFSSMFLIQFLMFSKLFSFVTS*TSIIPIEPR*YAVVLYGISLDQQY 223
+SALAF SM++I + ++FV + I P + VLY + D Q+
Sbjct: 401 SSALAFLSMYVIVDMAVLLCYAFVRTIQIIRKTGPYSHPDVLYNLYSDTQH 451
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 544 AKMEKKQEASNPSGGRSGVHKPT 612
A + +ASNP+G S H+PT
Sbjct: 546 ASLAHLSQASNPNGSSSAPHRPT 568
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 6.5
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +3
Query: 60 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQE 239
F L+L G+SG+GKT+ F F+ + S +G + K+R + K V+++I +E
Sbjct: 29 FTLMLCGESGLGKTT----FCNTLFSTTIKSHMGPE-KVRAKHAE-KTVEIEITKAELEE 82
Query: 240 R 242
+
Sbjct: 83 K 83
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 127 SSENLNSIDVFPTPESPIRSNLNKQS 50
SSE +S+DV PTP + NL S
Sbjct: 617 SSEPTSSVDVAPTPVEDVNVNLESIS 642
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -1
Query: 381 FSTSALAFSSMFLIQFLMFSKLFSFVTS*TSIIPIEPR*YAVVLYGISLDQQYPIF 214
F+ L +LIQF +SF T+ T+ +E V GI D Y IF
Sbjct: 861 FTIPELGIIQKYLIQFEWLDMFYSFETTRTTDSDLERLITYGVSAGIPEDNDYMIF 916
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 308 NEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQR-QVSKERGEQLAIEYQIKFVET 484
N +S + N I E+ VEK + GN+ L S+ +V K+ + E +
Sbjct: 58 NLESLRKLTNAQNTIIEDKKRKVEKPVSGNQFSLLSEEDEVDKKEKRRRRFENGSRSQNN 117
Query: 485 SAKDSLNVN 511
+ + L VN
Sbjct: 118 AKSEELKVN 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,567
Number of Sequences: 5004
Number of extensions: 65530
Number of successful extensions: 269
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -