Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30399
         (710 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CF325 Cluster: Tubulin-tyrosine ligase family p...    35   2.3  
UniRef50_A5KAP9 Cluster: Putative uncharacterized protein; n=2; ...    35   2.3  

>UniRef50_UPI00006CF325 Cluster: Tubulin-tyrosine ligase family
            protein; n=1; Tetrahymena thermophila SB210|Rep:
            Tubulin-tyrosine ligase family protein - Tetrahymena
            thermophila SB210
          Length = 1453

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = -3

Query: 324  SNRNKKIFQNKLIYTKNNNHRNR*RDIELLTNS 226
            +N N   FQ+K +  KNNN+RN  +DIEL  NS
Sbjct: 1036 NNNNDGDFQDKYLIIKNNNNRNE-KDIELTPNS 1067


>UniRef50_A5KAP9 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 4139

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = -2

Query: 517  FKVNINTKYIMKFY--I*NSVCLVSFNVCVRLPLGALFQLH 401
            F + +N+ Y+ KF   I  S+C+V+ N+ V LPLG ++ LH
Sbjct: 1175 FLLLLNSNYVFKFNSSIVYSICVVAKNLLVLLPLGGVYILH 1215


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,173,843
Number of Sequences: 1657284
Number of extensions: 9075620
Number of successful extensions: 18436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18420
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)