Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30399
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05730.1 68414.m00597 expressed protein contains Pfam profile...    28   7.0  
At2g43720.1 68415.m05435 expressed protein                             27   9.3  

>At1g05730.1 68414.m00597 expressed protein contains Pfam profile
           PF05811: Eukaryotic protein of unknown function (DUF842)
          Length = 149

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 389 LTFTLSRTFKNCK*TCFNKNRLQIEI 312
           + FTL + +  C   CF++NR Q EI
Sbjct: 38  INFTLQQAYFKCAYECFDRNRKQEEI 63


>At2g43720.1 68415.m05435 expressed protein
          Length = 147

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 389 LTFTLSRTFKNCK*TCFNKNRLQIEIKRYSKT 294
           + FTL + +  C   CF++ R   EI R +++
Sbjct: 36  INFTLQKAYFKCAYECFDRTRTHAEISRCAES 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,596,929
Number of Sequences: 28952
Number of extensions: 193736
Number of successful extensions: 293
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)