Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30398
(719 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 182 6e-45
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 162 7e-39
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 115 1e-24
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 98 2e-19
UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960... 93 5e-18
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 88 2e-16
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 88 2e-16
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 87 3e-16
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 82 2e-14
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 82 2e-14
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 76 1e-12
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 73 7e-12
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 68 2e-10
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 66 6e-10
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 62 1e-08
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 60 4e-08
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 56 7e-07
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 52 2e-05
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 51 2e-05
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 45 0.002
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 38 0.33
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 36 1.0
UniRef50_A7R1I6 Cluster: Chromosome undetermined scaffold_358, w... 36 1.3
UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole geno... 36 1.3
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 36 1.3
UniRef50_A6FVI8 Cluster: Surface repeat protein, putative; n=2; ... 35 1.8
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 35 1.8
UniRef50_UPI0000E24B4A Cluster: PREDICTED: hypothetical protein;... 34 3.1
UniRef50_Q2BPA5 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 34 4.1
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 34 4.1
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 34 4.1
UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular org... 33 9.4
UniRef50_A7KG39 Cluster: Putative pilin biogenesis protein; n=5;... 33 9.4
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 182 bits (444), Expect = 6e-45
Identities = 112/236 (47%), Positives = 142/236 (60%), Gaps = 9/236 (3%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P+MF RQVG TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DAERSFRKF+L+AE V
Sbjct: 36 PNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAERSFRKFKLVAESVN 95
Query: 537 GRNVLCNFHGWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVS-PIRTP*ANA 361
GR+VL NFHG +K + + ++ + D F + + I+ +
Sbjct: 96 GRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVD-VKTTDGFMLRVFCIGFTIKDSMSQR 154
Query: 360 RRVRPAHSGQSNQKENV*NHYTRRH*L*T--QGGGEQVIPDSIAKYIEKACHGIYPLRDV 187
+ HS N + + +R T +G E+++PDSIAK IEKAC +YPL DV
Sbjct: 155 KTCYAQHSQIKNIRAKM-TAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDV 213
Query: 186 CIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKS------ERPEGYEPPVQESV 37
IRKVKVLK+PRF++S LMELH + +RPEGYEPPVQ SV
Sbjct: 214 YIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGVVVDRPEGYEPPVQASV 269
Score = 95.9 bits (228), Expect = 9e-19
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = -2
Query: 508 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 353
M LTTDKLR MVKKWQTLIE ++DVKTTDG++LRVFCIGFT KDS+SQRKTC
Sbjct: 106 MALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTC 157
Score = 41.1 bits (92), Expect = 0.027
Identities = 17/33 (51%), Positives = 26/33 (78%)
Frame = -1
Query: 353 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 255
YAQH+Q++ IR KM II R++T+++L+ VV K
Sbjct: 158 YAQHSQIKNIRAKMTAIIKREITSTDLKGVVEK 190
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 162 bits (394), Expect = 7e-39
Identities = 108/235 (45%), Positives = 136/235 (57%), Gaps = 8/235 (3%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P+MF+ R +G TLV RTQGTKIAS+GLKGRVFEVSLADLQ D E +FRKF+LI E VQ
Sbjct: 36 PAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQND---EVAFRKFKLITEDVQ 92
Query: 537 GRNVLCNFHGWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*ANAR 358
G+N L NFHG +K + + + + D + + V + R
Sbjct: 93 GKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVD-VKTTDGYLLRLFCVGFTKKRNNQIR 151
Query: 357 RVRPAHSGQSNQ-KENV*NHYTRRH*L*TQGGGE---QVIPDSIAKYIEKACHGIYPLRD 190
+ A Q Q ++ + TR + T E ++IPDSI K IEKAC IYPL D
Sbjct: 152 KTSYAQHQQVRQIRKKMMEIMTRE--VQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD 209
Query: 189 VCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGD----KSERPEGYEPPVQESV 37
V +RKVK+LK+P+FE+ KLMELH GD K ER +GYEPPVQESV
Sbjct: 210 VFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 264
Score = 81.8 bits (193), Expect = 2e-14
Identities = 38/75 (50%), Positives = 50/75 (66%)
Frame = -2
Query: 529 CALQLPRMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCT 350
C MDLT DK+ MVKKWQT+IEA++DVKTTDGY+LR+FC+GFT K + RKT
Sbjct: 96 CLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSY 155
Query: 349 PSTLRSEQSERKCVK 305
+ Q +K ++
Sbjct: 156 AQHQQVRQIRKKMME 170
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = -1
Query: 353 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 255
YAQH QVR IRKKM EI+TR+V ++L+EVVNK
Sbjct: 155 YAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNK 187
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 115 bits (276), Expect = 1e-24
Identities = 76/203 (37%), Positives = 112/203 (55%), Gaps = 4/203 (1%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P+ F+ R VG TLVNR+ G K A++ LKGR+FEVSLADLQ D D +FRK +L + VQ
Sbjct: 35 PAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDED--HAFRKIKLRVDEVQ 92
Query: 537 GRNVLCNFHG--WTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*AN 364
G+N L NFHG +TS + S + + T+ + D + + ++ +
Sbjct: 93 GKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTV---KTTDDYLLRLFAIAVTKRRPNQ 149
Query: 363 ARRVRPAHSGQSNQKENV*NHYTRRH--*L*TQGGGEQVIPDSIAKYIEKACHGIYPLRD 190
++ A S Q +R Q ++IP+ I + IEKA GIYPL++
Sbjct: 150 IKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIYPLQN 209
Query: 189 VCIRKVKVLKRPRFEISKLMELH 121
V IRKVK+LK+P+F++ L+ LH
Sbjct: 210 VHIRKVKLLKQPKFDLGGLLALH 232
Score = 66.1 bits (154), Expect = 8e-10
Identities = 32/83 (38%), Positives = 48/83 (57%)
Frame = -2
Query: 529 CALQLPRMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCT 350
C +D T+DKLR +V+KWQ+LIEAN+ VKTTD Y+LR+F I T + +KT
Sbjct: 96 CLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAVTKRRPNQIKKTTY 155
Query: 349 PSTLRSEQSERKCVKSLHATSLT 281
++ + RK + + + T
Sbjct: 156 AASSQIRAIRRKMTEIIQREAST 178
Score = 37.9 bits (84), Expect = 0.25
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = -1
Query: 353 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 255
YA +Q+RAIR+KM EII R+ + L+++ NK
Sbjct: 155 YAASSQIRAIRRKMTEIIQREASTCTLQQLTNK 187
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 97.9 bits (233), Expect = 2e-19
Identities = 51/70 (72%), Positives = 57/70 (81%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
PS+F R VG TLV+RTQGTKIASEGLK RVFE+SLADLQAD D +++RK RL AE VQ
Sbjct: 430 PSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADED--QAYRKIRLRAEDVQ 487
Query: 537 GRNVLCNFHG 508
GRNVL NF G
Sbjct: 488 GRNVLTNFWG 497
Score = 83.8 bits (198), Expect = 4e-15
Identities = 38/65 (58%), Positives = 46/65 (70%)
Frame = -2
Query: 508 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCTPSTLRSE 329
MD TTDKLR +V+KWQTLIEA++DVKTTD Y LR+FCI FT K +KTC + +
Sbjct: 498 MDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIR 557
Query: 328 QSERK 314
Q RK
Sbjct: 558 QIRRK 562
Score = 63.3 bits (147), Expect = 6e-09
Identities = 36/75 (48%), Positives = 48/75 (64%)
Frame = -3
Query: 261 EQVIPDSIAKYIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDK 82
++ IP+SI + IEKA IYPL++V IRKVK+LK P+F++ KLME+H G K
Sbjct: 581 KKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVH---GDYSEDVGTK 637
Query: 81 SERPEGYEPPVQESV 37
ERP + PV E V
Sbjct: 638 LERPA--DEPVAEGV 650
Score = 39.9 bits (89), Expect = 0.062
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = -1
Query: 431 DNRWIRSTCLLHWFHQ*GLLEPTQDVYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 255
DN +R C+ F + + + + YAQ +Q+R IR+KM EI+T T+ +L+E+V K
Sbjct: 526 DNYTLRLFCIA--FTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKK 582
>UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960;
n=40; Coelomata|Rep: Uncharacterized protein
ENSP00000341960 - Homo sapiens (Human)
Length = 79
Score = 93.5 bits (222), Expect = 5e-18
Identities = 48/78 (61%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Frame = -3
Query: 258 QVIPDSIAKYIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGD-- 85
++IPDSI K IEKAC IYPL DV +RKVK+LK+P+FE+ KLMELH GD
Sbjct: 2 KLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGDSSSSGKAIGDET 61
Query: 84 --KSERPEGYEPPVQESV 37
K ER EGYEPPVQESV
Sbjct: 62 GAKVERAEGYEPPVQESV 79
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 88.2 bits (209), Expect = 2e-16
Identities = 51/80 (63%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P+MF+ R +G TLV RTQGTKIAS+ GRVFEVSLADLQ D E +FRKF+LI E VQ
Sbjct: 36 PAMFNIRNIGKTLVTRTQGTKIASD---GRVFEVSLADLQND---EVAFRKFKLITEDVQ 89
Query: 537 GRNVLCNFHG--WTSQPISS 484
G+N L NFHG TS I+S
Sbjct: 90 GKNCLTNFHGVDLTSDKITS 109
Score = 87.8 bits (208), Expect = 2e-16
Identities = 45/78 (57%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Frame = -3
Query: 258 QVIPDSIAKYIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGD-- 85
++IPDSI K +EKAC IYPL DV +RKVK+LK+P+FE+ KLMELH GD
Sbjct: 134 KLIPDSIGKDVEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGCSSGKATGDET 193
Query: 84 --KSERPEGYEPPVQESV 37
K ER +GYE PVQESV
Sbjct: 194 GVKVERADGYELPVQESV 211
Score = 36.7 bits (81), Expect = 0.58
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -1
Query: 326 IRKKMCEIITRDVTNSELREVVNK 255
IRKKM EI+TR+V ++L+EVVNK
Sbjct: 111 IRKKMMEIMTREVQTNDLKEVVNK 134
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 88.2 bits (209), Expect = 2e-16
Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 4/203 (1%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P+ F KRQ T+ N+TQGT+IA++ L+GRVFE +LADL E ++RK R + VQ
Sbjct: 36 PANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQ 95
Query: 537 GRNVLCNFHGWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*ANAR 358
GRN+L FH L+ + + T+ Y V P AN +
Sbjct: 96 GRNLLTQFHSMEVTTDKMANLLRKWCTTMETTV--EVKTADGYTMRLFVVAFTKPQAN-Q 152
Query: 357 RVRPAHSGQSNQK---ENV*NHYTRR-H*L*TQGGGEQVIPDSIAKYIEKACHGIYPLRD 190
+ R ++ Q K + RR + + + + ++ + + C+ I PLR+
Sbjct: 153 QSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRE 212
Query: 189 VCIRKVKVLKRPRFEISKLMELH 121
+ IRKV+V++ P+F+ L+ H
Sbjct: 213 LRIRKVRVVRTPKFDAQALLSAH 235
Score = 57.6 bits (133), Expect = 3e-07
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = -2
Query: 520 QLPRMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 353
Q M++TTDK+ +++KW T +E ++VKT DGY +R+F + FT + Q + C
Sbjct: 102 QFHSMEVTTDKMANLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNC 157
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 87.4 bits (207), Expect = 3e-16
Identities = 45/68 (66%), Positives = 53/68 (77%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P+MF+ R +G TLV RTQGTKIAS+GLKG VFE+SLADLQ D E +FRKF+LI E VQ
Sbjct: 36 PAMFNIRNIGKTLVTRTQGTKIASDGLKGGVFEMSLADLQND---EVAFRKFKLITEDVQ 92
Query: 537 GRNVLCNF 514
G+ L NF
Sbjct: 93 GKRCLINF 100
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 81.8 bits (193), Expect = 2e-14
Identities = 41/63 (65%), Positives = 51/63 (80%)
Frame = -3
Query: 696 QVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCN 517
+VG T VNRTQGTK+AS+GLKGRV+EVSLAD++ D + FRK +L AE V+GRNVL N
Sbjct: 41 KVGFTPVNRTQGTKLASDGLKGRVYEVSLADMK--DDESQVFRKIKLRAEEVEGRNVLTN 98
Query: 516 FHG 508
F+G
Sbjct: 99 FYG 101
Score = 75.8 bits (178), Expect = 1e-12
Identities = 38/73 (52%), Positives = 46/73 (63%)
Frame = -2
Query: 508 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCTPSTLRSE 329
MDLT+DKLR ++ KW TLIE +DVKTTDGY LRVF I FT K ++KT T R +
Sbjct: 102 MDLTSDKLRSLIHKWSTLIECFVDVKTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVK 161
Query: 328 QSERKCVKSLHAT 290
+K V L T
Sbjct: 162 AIRKKMVDILTET 174
Score = 38.3 bits (85), Expect = 0.19
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = -3
Query: 243 SIAKYIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 121
++A+ I I+P+ +V IRKVKVLK P+ + +KL EL+
Sbjct: 205 TLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKLSELY 245
Score = 36.3 bits (80), Expect = 0.76
Identities = 15/32 (46%), Positives = 27/32 (84%)
Frame = -1
Query: 353 YAQHTQVRAIRKKMCEIITRDVTNSELREVVN 258
YA+ ++V+AIRKKM +I+T V++++L+ VV+
Sbjct: 154 YAKTSRVKAIRKKMVDILTETVSSNDLKTVVD 185
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 81.8 bits (193), Expect = 2e-14
Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 5/204 (2%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P F+ G T +N++ GT +A+E +KGRV E SLADLQ +D + ++RK +LI + V+
Sbjct: 33 PVPFAAGGFGYTCINKSAGTVVATEAIKGRVVEASLADLQGQSD-QMAWRKVKLIIDDVE 91
Query: 537 GRNVLCNFHGWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*ANAR 358
G +F+G S G +K R + T + + D + + +++ ++ R
Sbjct: 92 GTRCRTSFYGLDSTKDKIFGMIKK-RQTLIETQVEARSQDGYILRIFVIAFTKSIKNQQR 150
Query: 357 RVRPAHSGQSNQ-----KENV*NHYTRRH*L*TQGGGEQVIPDSIAKYIEKACHGIYPLR 193
+ A Q E V +++ G Q +S+AK I KA I+PL+
Sbjct: 151 KTTYAQRSQIKDIRKKIVEIVLKEVSKKSITQLLGFFNQ---ESLAKEIGKATRTIFPLQ 207
Query: 192 DVCIRKVKVLKRPRFEISKLMELH 121
++ +RKVK++KRP+ + KL E +
Sbjct: 208 NITLRKVKLVKRPKVDAQKLREFY 231
Score = 58.8 bits (136), Expect = 1e-07
Identities = 29/77 (37%), Positives = 42/77 (54%)
Frame = -2
Query: 535 T*CALQLPRMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 356
T C +D T DK+ M+KK QTLIE ++ ++ DGY+LR+F I FT QRKT
Sbjct: 93 TRCRTSFYGLDSTKDKIFGMIKKRQTLIETQVEARSQDGYILRIFVIAFTKSIKNQQRKT 152
Query: 355 CTPSTLRSEQSERKCVK 305
+ + +K V+
Sbjct: 153 TYAQRSQIKDIRKKIVE 169
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 75.8 bits (178), Expect = 1e-12
Identities = 33/58 (56%), Positives = 45/58 (77%)
Frame = -2
Query: 529 CALQLPRMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 356
C + + LTTDKLR +VKKW TLIE ++DVKTTDG+++R+FCIGFT++ S +KT
Sbjct: 98 CLMIFHGLKLTTDKLRSIVKKWCTLIETSVDVKTTDGHLIRIFCIGFTSRKSNQIKKT 155
Score = 60.9 bits (141), Expect = 3e-08
Identities = 34/70 (48%), Positives = 43/70 (61%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P F +R VG +VN+T GT+IASE LKGRV EV+LADL + KF+ E V
Sbjct: 37 PKNFKRRTVGQIVVNKTAGTRIASEQLKGRVVEVNLADLMENEKFGAYNYKFK--CEDVN 94
Query: 537 GRNVLCNFHG 508
G++ L FHG
Sbjct: 95 GKDCLMIFHG 104
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 72.9 bits (171), Expect = 7e-12
Identities = 36/74 (48%), Positives = 50/74 (67%)
Frame = -3
Query: 258 QVIPDSIAKYIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKS 79
+++PD++ K +EKAC IYPL DV +RKVK+L++P+ ++ KL ELH KS
Sbjct: 170 KLVPDNVGKDVEKACQFIYPLHDVFVRKVKILQKPKLDLGKLPELHALGLHGSHR---KS 226
Query: 78 ERPEGYEPPVQESV 37
+R YEPPVQESV
Sbjct: 227 DR---YEPPVQESV 237
Score = 59.7 bits (138), Expect = 7e-08
Identities = 34/69 (49%), Positives = 44/69 (63%)
Frame = -3
Query: 714 SMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQG 535
+MF+ R +G T V R Q TK+ S GL G VFE SLA LQ D + RKF+LI E ++G
Sbjct: 22 TMFNVRNIGKTQVLRKQETKMVSVGLNGLVFEASLASLQND---KVVVRKFKLITEDMRG 78
Query: 534 RNVLCNFHG 508
+N L N +G
Sbjct: 79 KNGLTNSYG 87
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = -2
Query: 508 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 386
MDLT DK V KWQ ++EA+ DVKT D Y+L +FC+G+T
Sbjct: 88 MDLTWDKRCNKVIKWQ-MVEAHADVKTADYYLLCLFCVGYT 127
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/76 (42%), Positives = 49/76 (64%)
Frame = -2
Query: 508 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCTPSTLRSE 329
+D+T D+L M++KWQTLIEA +D KT DGY++RVF + FT K S K + ST ++
Sbjct: 106 LDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAG--KQSSTSTCYAK 163
Query: 328 QSERKCVKSLHATSLT 281
S+ + ++ T +T
Sbjct: 164 SSQVRAIRRKINTFIT 179
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P FS + G TLV ++ G +IASE +KGRV E +LADL+ D ++++RK +L+ + V
Sbjct: 37 PIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLK-DNSNDKAWRKVKLVIDEVD 95
Query: 537 GRNVLCNFHG 508
GRN +F+G
Sbjct: 96 GRNAKTSFYG 105
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = -3
Query: 261 EQVIPDSIAKYIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 121
+ +I + K IEK I+PL+++ IRKVKVLKRP+ + +K+ EL+
Sbjct: 192 KNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 66.5 bits (155), Expect = 6e-10
Identities = 35/75 (46%), Positives = 43/75 (57%)
Frame = -2
Query: 529 CALQLPRMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCT 350
C MDLT DKL MV KWQ+ IEA++DVKTTDGY LR F I FT K Q+
Sbjct: 22 CLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVIAFTKKQE-DQKSHAY 80
Query: 349 PSTLRSEQSERKCVK 305
T R ++ + V+
Sbjct: 81 AQTTRIKKLRAEIVE 95
Score = 57.2 bits (132), Expect = 4e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = -3
Query: 261 EQVIPDSIAKYIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDK 82
+++IPDSI + I+PL +RKVKVLK+P+ ++ +++ELH G+
Sbjct: 111 QKLIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRILELH--SEGKADEFGEG 168
Query: 81 SERPEGYEPPVQESV 37
RP+ YEPPV ++V
Sbjct: 169 VPRPDHYEPPVVDAV 183
Score = 34.7 bits (76), Expect = 2.3
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -3
Query: 573 FRKFRLIAEYVQGRNVLCNFHG 508
FRKF+L E VQGR+ L NFHG
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHG 28
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 4/57 (7%)
Frame = -3
Query: 195 RDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGD----KSERPEGYEPPVQESV 37
R +C++KVK+LK+P+FE+ KLMELH GD K ER EGYEPPVQESV
Sbjct: 63 RVMCLKKVKMLKKPKFELGKLMELHGDSSSSGKAIGDETGAKVERAEGYEPPVQESV 119
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 60.5 bits (140), Expect = 4e-08
Identities = 31/85 (36%), Positives = 52/85 (61%)
Frame = -2
Query: 553 RRICART*CALQLPRMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDS 374
R I A + Q M LT DKL +++K++T+I+A++D KT DG++LR+F IGFT K +
Sbjct: 84 RSIAAGSEVYTQFAGMRLTHDKLDSIMRKYRTMIDASVDAKTADGFILRLFTIGFTKKLA 143
Query: 373 LSQRKTCTPSTLRSEQSERKCVKSL 299
S + ++ ++ Q +K+L
Sbjct: 144 NSHKNHTYANSHKARQVRDVMIKAL 168
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 56.4 bits (130), Expect = 7e-07
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = -2
Query: 508 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 353
M+LT+DK + M+KKW TLIEA D+ DG V RVF +G T + +KTC
Sbjct: 55 MELTSDKHKAMIKKWHTLIEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTC 106
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/70 (35%), Positives = 37/70 (52%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P+ F R +G T V +T G ++A++ + RV+EV+L DL + KF L + V
Sbjct: 33 PAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLNGNTKFYLQTQLVS 92
Query: 537 GRNVLCNFHG 508
L NFHG
Sbjct: 93 DGKCLTNFHG 102
Score = 49.6 bits (113), Expect = 8e-05
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = -2
Query: 529 CALQLPRMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 353
C MD+T K + +K I+ +D+ TTDGY+LRVF I FT++ +RK C
Sbjct: 96 CLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFVIAFTDRFRFQRRKNC 154
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = -2
Query: 529 CALQLPRMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 356
C + + LT DK+ ++KKW TLIE ++ KT DGY L++F I + K + KT
Sbjct: 92 CFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFLIAQSKKPKNMKSKT 149
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = -2
Query: 505 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQR 362
+LTTD +R +VK+ + I+AN+DV+T DG+V+RV FT K + S +
Sbjct: 86 ELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIRVKPTCFTIKRARSSQ 133
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 37.5 bits (83), Expect = 0.33
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -2
Query: 511 RMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDS-LSQRK 359
+ +LT D LR +V++ + +EA+I V TTD Y +RV + T K + SQ K
Sbjct: 81 KYELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALTTKKADRSQEK 132
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 35.9 bits (79), Expect = 1.0
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -2
Query: 511 RMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCTPSTLR 335
R +LT + L + ++ + IE +DV T DGY LRV + FT + + +K + +R
Sbjct: 87 RFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRVKSVVFTVRRCKTSQKRAIRAIMR 145
>UniRef50_A7R1I6 Cluster: Chromosome undetermined scaffold_358,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_358, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 247
Score = 35.5 bits (78), Expect = 1.3
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -3
Query: 651 ASEGLKGRVFEVSLA---DLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGWTSQPISSG 481
A+EGL GRV EV L ADT S+ + L+A ++G N++ GW S S
Sbjct: 168 ATEGLVGRVLEVDLQAGDGGSADTCYTYSYSECALVAVSLEG-NIVATMWGWISLNSSYY 226
Query: 480 GWLKN 466
WL++
Sbjct: 227 TWLRD 231
>UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 168
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +1
Query: 535 SLHIFGD*SEFAERPFRVSVSL*ISQGNFENSSLQSFRSNFRSLGTVDKRGADLPLAEHR 714
SLH+ G S+ + + L ISQGN ++S L+ FR + S + +K A++ AE R
Sbjct: 61 SLHVLGSQSDLPVG--MILIVLNISQGNLKHSVLEPFRGDLGSQSSANKGFANISDAEDR 118
Query: 715 R 717
R
Sbjct: 119 R 119
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 35.5 bits (78), Expect = 1.3
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = -2
Query: 505 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 356
D+TTD +R M+++ ++ I+ +V+T+DGY +RV + ++ S KT
Sbjct: 90 DMTTDYIRRMIRRRRSRIDMIFNVETSDGYRMRVKVLTVPDRRIKSSIKT 139
>UniRef50_A6FVI8 Cluster: Surface repeat protein, putative; n=2;
cellular organisms|Rep: Surface repeat protein, putative
- Roseobacter sp. AzwK-3b
Length = 5954
Score = 35.1 bits (77), Expect = 1.8
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 64 ALRPFRLVSGFPLASTAFAVKFHQLR-DLETGPLQHFHLSDANIAQRVDAMAGLLDVLGN 240
AL RL + P+ V QL D+ TGP+ H + D Q V A GL+D+ GN
Sbjct: 5486 ALSVLRLGALVPVGPDGLGVALDQLDLDVTTGPV-HLNERDGIDLQSVIARDGLIDIFGN 5544
Query: 241 GVRNHLFTTSLSSELV 288
G+ +L+S+ V
Sbjct: 5545 GLMQVGTVRALASQPV 5560
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 35.1 bits (77), Expect = 1.8
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -2
Query: 511 RMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDS-LSQRK 359
R +LT D LR +V++ + +EA I V TTD Y +++ + T K + SQ K
Sbjct: 81 RHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVTTKKADASQEK 132
>UniRef50_UPI0000E24B4A Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 446
Score = 34.3 bits (75), Expect = 3.1
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 129 PSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCTW 236
PSTS S G + + G RA G C GR R TW
Sbjct: 369 PSTSDSVCGRAEPAASLGAAQRAPGGCSGRRQRATW 404
>UniRef50_Q2BPA5 Cluster: Putative uncharacterized protein; n=1;
Neptuniibacter caesariensis|Rep: Putative
uncharacterized protein - Neptuniibacter caesariensis
Length = 626
Score = 33.9 bits (74), Expect = 4.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 243 SQESLVHHLPEFRVSDVACNDFTHFLSDCSD-LSVLGVHVLRWLKESLLVKP 395
S+E L+HH+P+ V C F+S D LG+ RW +ES P
Sbjct: 482 SREQLIHHIPDLPQRTVMCCGPEGFMSHAKDYCRQLGLAEQRWFEESFGAPP 533
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 33.9 bits (74), Expect = 4.1
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = -2
Query: 505 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNK 380
+LT D +R +VK+ + I+AN+ V T DG+ +RV I T K
Sbjct: 85 ELTRDYMRSLVKRRTSKIDANVVVTTKDGFKVRVKPIVLTVK 126
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 33.9 bits (74), Expect = 4.1
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = -2
Query: 511 RMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 359
R + + + LR +V++ + + +DVKT+DGYV R+ + T + + +K
Sbjct: 84 RYEYSKEYLRSLVRRGSSKVNYIVDVKTSDGYVFRLKVLALTYRHLNTSKK 134
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 33.9 bits (74), Expect = 4.1
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = -2
Query: 502 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDS-LSQRKTCTPSTLR-SE 329
L D +R +V++ + I+ IDV T DGY +RV + FT + + SQ++ + E
Sbjct: 80 LMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFTTRRAKTSQQRAIRKEMFKVIE 139
Query: 328 QSERKC 311
++ ++C
Sbjct: 140 ENAKEC 145
>UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular
organisms|Rep: L-Amino-acid oxidase - Ralstonia eutropha
(strain ATCC 17699 / H16 / DSM 428 / Stanier
337)(Cupriavidus necator (strain ATCC 17699 / H16 / DSM
428 / Stanier337))
Length = 434
Score = 32.7 bits (71), Expect = 9.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 507 WTSQPISSGGWL--KNGRLSSKPTLM*RQPMDTFYVSSALVSPI 382
W + P S GGW+ + G L+ LM RQP + + A ++PI
Sbjct: 363 WANDPFSKGGWMHHRPGNLTQAAPLM-RQPHGRIHFAGADIAPI 405
>UniRef50_A7KG39 Cluster: Putative pilin biogenesis protein; n=5;
Enterobacteriaceae|Rep: Putative pilin biogenesis
protein - Klebsiella pneumoniae
Length = 179
Score = 32.7 bits (71), Expect = 9.4
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -3
Query: 636 KGRVFEVSLADLQADTDAERSFRKFRLIAEY---VQGRNVLCNFHGWTSQPISSGGWLKN 466
KG VFE +AD + T R+ F + +Y +Q RN + + WT QP G +
Sbjct: 109 KGNVFE-GIADYNSKTPKVRAKYIFNFMVKYNRRIQQRNGMGELYQWTQQPPRYNGHIAK 167
Query: 465 GRLSSKPT 442
PT
Sbjct: 168 NVPEQNPT 175
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,865,773
Number of Sequences: 1657284
Number of extensions: 14323858
Number of successful extensions: 41716
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 40135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41680
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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