Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30398
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 111 1e-25
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 99 3e-22
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 29 0.67
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 28 1.2
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.5
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 2.7
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 27 3.6
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 8.2
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 8.2
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 111 bits (267), Expect = 1e-25
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 7/206 (3%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D E SFRK +L E +Q
Sbjct: 35 PAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDEEHSFRKVKLRVEDIQ 92
Query: 537 GRNVLCNFHGW--TSQPISSGGWLKNGRLSSKPTLM*RQP-MDTFYV---SSALVSPI-R 379
G++ L +F+G+ TS + S + + T+ + +V +S V+ + +
Sbjct: 93 GKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKK 152
Query: 378 TP*ANARRVRPAHSGQSNQKENV*NHYTRRH*L*TQGGGEQVIPDSIAKYIEKACHGIYP 199
T A + ++R H +N N + + + +++IP+ I + IEKA + IYP
Sbjct: 153 TTYAQSSQIRAIHQKMFQVIQNQANGCSMKELV------QKLIPEVIGRAIEKATNNIYP 206
Query: 198 LRDVCIRKVKVLKRPRFEISKLMELH 121
L++V +RKVK+LK P+ + KL+ELH
Sbjct: 207 LQNVFVRKVKILKAPKHDAQKLLELH 232
Score = 66.5 bits (155), Expect = 4e-12
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = -2
Query: 529 CALQLPRMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 356
C D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT
Sbjct: 96 CLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKT 153
Score = 33.1 bits (72), Expect = 0.041
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 353 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 255
YAQ +Q+RAI +KM ++I ++E+V K
Sbjct: 155 YAQSSQIRAIHQKMFQVIQNQANGCSMKELVQK 187
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 99 bits (238), Expect = 3e-22
Identities = 73/204 (35%), Positives = 111/204 (54%), Gaps = 5/204 (2%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D E +FRK +L E +Q
Sbjct: 35 PAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDEEHAFRKVKLRVEDIQ 92
Query: 537 GRNVLCNFHGWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*ANAR 358
G++ L +F+G + I+S L++ + T+ Q + T V I A
Sbjct: 93 GKSCLTSFNGLS---ITSDK-LRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRAN 148
Query: 357 RVRPAHSGQSNQKENV*NHYTRRH*L*TQGGG-----EQVIPDSIAKYIEKACHGIYPLR 193
+V+ QS+Q + + T +++IP+ I + IE+A I+PL+
Sbjct: 149 QVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQ 208
Query: 192 DVCIRKVKVLKRPRFEISKLMELH 121
+V +RKVK+LK P+ + KL+ELH
Sbjct: 209 NVLVRKVKILKAPKHDAQKLLELH 232
Score = 65.7 bits (153), Expect = 6e-12
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = -2
Query: 529 CALQLPRMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 356
C + +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT
Sbjct: 96 CLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKT 153
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = -1
Query: 353 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 255
YAQ +Q+RAIR+KM ++I ++ +RE+V K
Sbjct: 155 YAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQK 187
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 29.1 bits (62), Expect = 0.67
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 100 LASTAFAVKFHQLRDLETGPLQHFHLSDANIAQRVDAMAGLLDVLGNGVRNHLFTTSLSS 279
L AF + R+ + LQ++HL AN DAM L + G+ H+F +S +
Sbjct: 333 LVGEAFFYGTYGARENKLRALQYYHL--ANDKGNADAMLALCKLYLRGLPGHIFPSSRRA 390
Query: 280 -ELVTSRVMISH 312
E M+ H
Sbjct: 391 FEYAHRAAMLGH 402
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 132 STSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCTWQWSQESLVHHLP 272
S + S N +S L R EG PSR QWS +S H +P
Sbjct: 330 SAATSGNISSPALFDSELGARPEGSVAIEPSRVLLQWSSQSSSHTIP 376
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +3
Query: 129 PSTSRSRNGASSTLSPFGCKHRAE 200
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Frame = +2
Query: 464 PFFNHPPELIGCEVHPWKLQSTLRPCTYSAINLN------LRKDLSA-SVSACRSARETS 622
P+ H C WK ++L P S ++ + L +D S VS R + ++
Sbjct: 179 PYTEHKRRRADCVFFTWKDPNSLSPTKLSFLSTSNIDPEDLTEDNSILPVSPTRDSTKSH 238
Query: 623 KTLPFNPS 646
KTL F+PS
Sbjct: 239 KTLNFSPS 246
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = -3
Query: 546 YVQGRNVLCNFHGWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTF 412
+V G+N+ +++G+TS P+ +G G+L L ++P ++F
Sbjct: 367 FVNGKNLTASYNGYTSCPLLTG----YGKLILAEFLYKQEPKESF 407
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 196 ARCLHPKGESVEEAPFRDLEVD 131
+RCL ++V+EA RDLE++
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIE 43
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 505 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 407
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,178
Number of Sequences: 5004
Number of extensions: 59943
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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