Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30398
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 125 4e-29
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 124 7e-29
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 95 7e-20
09_02_0094 + 4196729-4197571 29 2.8
08_02_0852 + 21877287-21877781 29 4.9
01_06_1071 - 34289609-34292941 29 4.9
01_01_0540 + 3957622-3960903 29 4.9
10_08_0066 + 14610220-14610798,14610928-14611287 28 6.5
03_05_0019 + 19862171-19863049 28 6.5
09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811... 28 8.6
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 8.6
03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216 28 8.6
02_01_0729 - 5465521-5466005,5466481-5466793,5466878-5467094,546... 28 8.6
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 125 bits (301), Expect = 4e-29
Identities = 82/201 (40%), Positives = 116/201 (57%), Gaps = 2/201 (0%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
PS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQ
Sbjct: 35 PSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQ 92
Query: 537 GRNVLCNFHGWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*ANAR 358
G+NVL NF G + +K + + + + D + + + + +
Sbjct: 93 GKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVD-VKTTDNYMLRLFCIGFTKRRPNQVK 151
Query: 357 RVRPAHSGQSNQ--KENV*NHYTRRH*L*TQGGGEQVIPDSIAKYIEKACHGIYPLRDVC 184
R A + Q Q ++ V + + + IP+ I K IEKA I+PL++V
Sbjct: 152 RTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVF 211
Query: 183 IRKVKVLKRPRFEISKLMELH 121
+RKVK+LK P+F++ KLME+H
Sbjct: 212 VRKVKILKAPKFDLGKLMEVH 232
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/68 (55%), Positives = 48/68 (70%)
Frame = -2
Query: 508 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCTPSTLRSE 329
M TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TC +
Sbjct: 103 MSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIR 162
Query: 328 QSERKCVK 305
Q RK V+
Sbjct: 163 QIRRKMVE 170
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = -1
Query: 353 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 255
YAQ +Q+R IR+KM EI+ ++ +L+E+V+K
Sbjct: 155 YAQASQIRQIRRKMVEIMVNQASSCDLKELVSK 187
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 124 bits (299), Expect = 7e-29
Identities = 82/201 (40%), Positives = 116/201 (57%), Gaps = 2/201 (0%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
P++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQ
Sbjct: 35 PTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQ 92
Query: 537 GRNVLCNFHGWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*ANAR 358
GRNVL NF G + +K + + + + D + + + + +
Sbjct: 93 GRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVD-VKTTDNYMLRLFCIGFTKRRPNQVK 151
Query: 357 RVRPAHSGQSNQ--KENV*NHYTRRH*L*TQGGGEQVIPDSIAKYIEKACHGIYPLRDVC 184
R A + Q Q ++ V + + + IP+ I K IEK+ I+PL++V
Sbjct: 152 RTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVF 211
Query: 183 IRKVKVLKRPRFEISKLMELH 121
IRKVK+LK P+F++ KLME+H
Sbjct: 212 IRKVKILKAPKFDLGKLMEVH 232
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/68 (55%), Positives = 48/68 (70%)
Frame = -2
Query: 508 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCTPSTLRSE 329
M TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TC +
Sbjct: 103 MSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIR 162
Query: 328 QSERKCVK 305
Q RK V+
Sbjct: 163 QIRRKMVE 170
Score = 36.7 bits (81), Expect = 0.019
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = -1
Query: 353 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 255
YAQ +Q+R IR+KM EI+ + +L+E+V+K
Sbjct: 155 YAQASQIRQIRRKMVEIMANQASTCDLKELVSK 187
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 94.7 bits (225), Expect = 7e-20
Identities = 49/70 (70%), Positives = 57/70 (81%)
Frame = -3
Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
PS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQ
Sbjct: 35 PSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQ 92
Query: 537 GRNVLCNFHG 508
G+NVL NF G
Sbjct: 93 GKNVLTNFWG 102
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/68 (57%), Positives = 49/68 (72%)
Frame = -2
Query: 508 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCTPSTLRSE 329
M TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TC +
Sbjct: 103 MSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIR 162
Query: 328 QSERKCVK 305
Q RK V+
Sbjct: 163 QIRRKMVE 170
Score = 58.8 bits (136), Expect = 4e-09
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = -3
Query: 252 IPDSIAKYIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 121
IP+ I K IEKA I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 189 IPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = -1
Query: 353 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 255
YAQ +Q+R IR+KM EI+ ++ +L+E+V+K
Sbjct: 155 YAQASQIRQIRRKMVEIMANQASSCDLKELVSK 187
>09_02_0094 + 4196729-4197571
Length = 280
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +3
Query: 306 FTHFLSDCSDLSVLGVHVLRWLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHL 485
FT FL CS H L++ KES L +P Y +VF + + F+ +
Sbjct: 139 FTMFLEGCSPFGPFWDHYLQYWKES-LKRPRDVLFLRYEEIVFDPLKVVRDLAGFIGVPF 197
Query: 486 SLSVVRS 506
+ V+S
Sbjct: 198 TEEEVKS 204
>08_02_0852 + 21877287-21877781
Length = 164
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 262 TTSLSSELVTSRVMISHIFFLIALT*VCWAYTSCVGSRS 378
TT+ SS L + R + + FL++ + W +S VGSR+
Sbjct: 10 TTTTSSLLGSFRTAVKKVRFLLSFSATRWILSSIVGSRA 48
>01_06_1071 - 34289609-34292941
Length = 1110
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 219 PSRCTWQWSQESLVHHLPEFRVSDVACNDFTHFLSDCSDLSVLGVHVLRWLKESL 383
PS W ES + LPE + + + + +++DC +L+ L V +L + +L
Sbjct: 867 PSTLRTLWISESGLESLPELQNNSCPSSPTSLYINDCPNLTSLRVGLLAYRPTAL 921
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 143 ISKRGLFNTFTFRMQT--SRRG*MPWQAFSMYLAMESGITCS 262
+S G++N RM RR PW+AFS +E G+ CS
Sbjct: 651 LSLEGVYNPVDGRMYLIGCRRIQAPWRAFSAMGGVEEGMDCS 692
>10_08_0066 + 14610220-14610798,14610928-14611287
Length = 312
Score = 28.3 bits (60), Expect = 6.5
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 49 NGRLVALRPFRLVSGFPLASTAFAVKFHQLRDLETGPLQHFHLS-DANIAQRVDAMA--G 219
NG+ + RPFR +G T + ++ E F L D ++ V+A A
Sbjct: 44 NGKSIKSRPFR--AG---GHTWHVAYYPNGQNAEKAEYMAFFLCLDDTASKGVEAKAIFS 98
Query: 220 LLDVLGNGVRNHLFTT 267
LLD+ GN V +H FTT
Sbjct: 99 LLDMEGNSVSSHSFTT 114
>03_05_0019 + 19862171-19863049
Length = 292
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -1
Query: 407 CLLHWFHQ*GLLEPTQDVYAQHTQVRAIRKKMCEIITRDVTNS 279
C W+ GL +P D+ H V+ +K+C ++ D S
Sbjct: 72 CGPDWYAMLGLPQPRSDLVTHHDAVKKQYRKLCLLVHPDKNTS 114
>09_04_0689 -
19480409-19480599,19480780-19480889,19481032-19481117,
19481410-19481523,19481697-19482066,19482216-19482346,
19482628-19482736,19482901-19483022,19483113-19483219,
19483447-19483551,19483654-19483812,19484071-19484126,
19484200-19484251,19486724-19486821,19487086-19487210
Length = 644
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 34 LNTLLNGRLVALRPFRLVSGFPLASTAFAVKFHQLRDLETGPL 162
L+TL +G++V R +SG P A V +H L E GPL
Sbjct: 366 LSTLPDGKIV-----RGLSGLPKQGPAVIVGYHMLLGFELGPL 403
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 616 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 708
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
>03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216
Length = 750
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 279 RVSDVACNDFTHFLSDCSDLSVLGVHVLRWLKESLLVKPM 398
R+SD+A ++FT CS++ VLG++VL + S P+
Sbjct: 116 RLSDLAVHEFTR----CSNIVVLGLYVLYYSNASQFRYPL 151
>02_01_0729 -
5465521-5466005,5466481-5466793,5466878-5467094,
5467797-5468116
Length = 444
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 246 QESLVHHLPEFRVSDVACNDFTHFLSDCSDLSVL 347
+ SLVH + VSDV+C H L CSD VL
Sbjct: 257 EPSLVHEVCHVEVSDVSCG-LDHSLVLCSDGIVL 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,534,608
Number of Sequences: 37544
Number of extensions: 413485
Number of successful extensions: 1229
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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