Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30398
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          79   4e-15
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)                     31   0.71 
SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)               31   0.94 
SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  28   6.6  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 42/79 (53%), Positives = 54/79 (68%), Gaps = 5/79 (6%)
 Frame = -3

Query: 258 QVIPDSIAKYIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH-----XXXXXXXXX 94
           ++IPDSI K IEK+C  IYPL DV IRKVKVLK+P+F+I KLME+H              
Sbjct: 70  KLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDE 129

Query: 93  XGDKSERPEGYEPPVQESV 37
            G K +R EG+EPP+Q++V
Sbjct: 130 TGTKIDR-EGFEPPIQDTV 147



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/33 (66%), Positives = 31/33 (93%)
 Frame = -1

Query: 353 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 255
           YA+HTQ++AIRKKM +IITR+V+ ++L+EVVNK
Sbjct: 38  YAKHTQIKAIRKKMVDIITREVSTNDLKEVVNK 70



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 25/51 (49%), Positives = 33/51 (64%)
 Frame = -2

Query: 460 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCTPSTLRSEQSERKCV 308
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT      + +   +K V
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMV 52


>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
          Length = 643

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
 Frame = -1

Query: 605 IYKLTLTR-KGLSANSD*SPNMCKDVMCSATSTDGPH------NR*AQVDG*KMADSH 453
           ++KLT+T  KGL+ +   + N+ KDV  +  +  GP       NR A++DG K +D H
Sbjct: 306 VFKLTVTDDKGLTGSGTVAVNVKKDVNQAPVARAGPDVVVHLPNRAAELDGSKSSDDH 363


>SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)
          Length = 272

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 438 SMLASMRVCHFLTIHLSLSVVRS-IRGSCRAHYVLAHI 548
           S+++S  +CH + +HLS     S I  SC  H V+ H+
Sbjct: 98  SVISSSCICHIVIVHLSYRHRASVISSSCICHIVIVHL 135



 Score = 31.1 bits (67), Expect = 0.94
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 438 SMLASMRVCHFLTIHLSLSVVRS-IRGSCRAHYVLAHI 548
           S+++S  +CH + +HLS     S I  SC  H V+ H+
Sbjct: 120 SVISSSCICHIVIVHLSYRHRASVISSSCICHIVIVHL 157



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 438 SMLASMRVCHFLTIHLSLSV-VRSIRGSCRAHYVLAHI 548
           S+++S  +CH + +HLS    V  I  SC  H V+ ++
Sbjct: 142 SVISSSCICHIVIVHLSYRYRVSVISLSCICHIVIVYL 179


>SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 270 PEFRVSDVACNDFTH-FLSDCSDL-SVLGVHVLRWLKESLLVKPMQKTRRTYPSVVFTSM 443
           P  R  D  C  FTH  +   S L S+  + ++   +   LVKPMQ  RR     V+ ++
Sbjct: 85  PTGRSGDWICKFFTHNAIMQISVLTSIFTLTIVSVERYHALVKPMQVGRRLTEDTVWYAV 144

Query: 444 LASMRVCHFLTI 479
           +AS      LT+
Sbjct: 145 IASWTASLILTV 156


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -3

Query: 627  VFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
            +F  + +D+QA+++    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 566 LRKDLSASVSACRSARETSKTLPFNPSEAIFV 661
           LRK L    S  +  RE  + L FNP E+ +V
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYV 333


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = -2

Query: 514 PRMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCTPSTLR 335
           PR DLT D+ +     WQ+  E+    K+     LR  C G   + S S    C P+   
Sbjct: 185 PRPDLTLDESK-PEGAWQSGTESTERRKSRFVSPLRSSCQGPRGRASRSWDGACAPTMPP 243

Query: 334 SEQSERKCVKSLH 296
            E+    C++  H
Sbjct: 244 PERQALACLRHTH 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,330,387
Number of Sequences: 59808
Number of extensions: 473729
Number of successful extensions: 1434
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)